Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-387 |
| Cow position: | chr13:32546245-32546622 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-397 |
| Cow position: | chr13:15519651-15519282 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 278 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 1-397 |
| Cow position: | chr13:30654524-30654157 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 66, 41 |
| Conread position: | 1-450 |
| Cow position: | chr13:43590185-43590611 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1-452 |
| Cow position: | chr13:34030476-34030898 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 1-452 |
| Cow position: | chr13:48358499-48358922 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 71 |
| Conread position: | 1-456 |
| Cow position: | chr13:4942238-4942683 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr13:9045625-9046052 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-456 |
| Cow position: | chr13:14177983-14177556 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 1-456 |
| Cow position: | chr13:14402242-14401810 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 1-456 |
| Cow position: | chr13:15543396-15543838 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr13:25692537-25692971 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 1-456 |
| Cow position: | chr13:31555888-31555461 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 184 |
| Conread position: | 1-456 |
| Cow position: | chr13:31611452-31611013 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 44 |
| Conread position: | 1-456 |
| Cow position: | chr13:31730040-31729594 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr13:34041481-34041036 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 1-456 |
| Cow position: | chr13:43982242-43981789 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 25 |
| Conread position: | 1-527 |
| Cow position: | chr13:15923524-15923008 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 33 |
| Conread position: | 1-555 |
| Cow position: | chr13:30239178-30239699 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 25 |
| Conread position: | 3-294 |
| Cow position: | chr13:6526575-6526855 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 3-383 |
| Cow position: | chr13:28347394-28347030 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 7-433 |
| Cow position: | chr13:34019853-34019463 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 376, 61 |
| Conread position: | 7-456 |
| Cow position: | chr13:6667271-6666841 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 7-456 |
| Cow position: | chr13:13900729-13901166 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 8-379 |
| Cow position: | chr13:47229139-47228775 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 8-380 |
| Cow position: | chr13:17998419-17998782 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-437 |
| Cow position: | chr13:21697114-21697543 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-452 |
| Cow position: | chr13:32984481-32984050 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 8-456 |
| Cow position: | chr13:678612-679049 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr13:2387946-2387507 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr13:11797857-11797409 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-559 |
| Cow position: | chr13:34049604-34050132 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 10-456 |
| Cow position: | chr13:28860027-28860462 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 12-450 |
| Cow position: | chr13:23002143-23001720 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 17-367 |
| Cow position: | chr13:6148095-6148431 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 17-456 |
| Cow position: | chr13:4484666-4485090 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 17-456 |
| Cow position: | chr13:13325800-13326225 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 19-428 |
| Cow position: | chr13:34938324-34938711 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 19-456 |
| Cow position: | chr13:49974537-49974964 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 27-595 |
| Cow position: | chr13:22184465-22183925 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 30-389 |
| Cow position: | chr13:29517881-29518228 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 107 |
| Conread position: | 30-456 |
| Cow position: | chr13:17309351-17309761 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 83 |
| Conread position: | 63-456 |
| Cow position: | chr13:34342822-34343204 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 87 |
| Conread position: | 98-456 |
| Cow position: | chr13:6358074-6358422 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 114-456 |
| Cow position: | chr13:5501032-5500701 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 180, 36 |
| Conread position: | 141-394 |
| Cow position: | chr13:44697863-44698112 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 197, 60 |
| Conread position: | 153-456 |
| Cow position: | chr13:16253524-16253218 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 88 |
| Conread position: | 186-456 |
| Cow position: | chr13:60648779-60648507 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 133 |
| Conread position: | 191-456 |
| Cow position: | chr13:42217655-42217384 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 6, 57 |
| Conread position: | 207-396 |
| Cow position: | chr13:26777183-26777374 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 129 |
| Conread position: | 225-456 |
| Cow position: | chr13:60468492-60468724 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 70, 185 |
| Conread position: | 232-456 |
| Cow position: | chr13:47575160-47575390 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 92 |
| Conread position: | 233-456 |
| Cow position: | chr13:33524877-33524658 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.