Cow genome map

Conread name: Liv1-LVRM10127A01

Conread position: 1-265
Cow position: chr15:6386609-6386359 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 138, 25

Conread position: 1-295
Cow position: chr15:32720012-32719718 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 66, 33

Conread position: 1-348
Cow position: chr15:2674916-2674588 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 234
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 62, 33

Conread position: 1-387
Cow position: chr15:6067447-6067083 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 41

Conread position: 1-396
Cow position: chr15:6079485-6079862 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-425
Cow position: chr15:53409647-53410054 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 293, 40

Conread position: 1-432
Cow position: chr15:20355870-20355443 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-432
Cow position: chr15:41357901-41358304 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-439
Cow position: chr15:4915924-4916328 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 33

Conread position: 1-441
Cow position: chr15:6383441-6382997 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-444
Cow position: chr15:1299829-1299388 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 151

Conread position: 1-445
Cow position: chr15:13074738-13075166 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 291
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 196, 28

Conread position: 1-452
Cow position: chr15:3260587-3260153 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 33

Conread position: 1-452
Cow position: chr15:6485315-6485746 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 25

Conread position: 1-454
Cow position: chr15:18577444-18577882 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr15:4386492-4386928 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 28

Conread position: 1-456
Cow position: chr15:4672171-4672605 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 39

Conread position: 1-456
Cow position: chr15:4922877-4923317 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr15:4962369-4962801 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 313
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 66, 40

Conread position: 1-456
Cow position: chr15:7837994-7838440 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 44

Conread position: 1-456
Cow position: chr15:8058690-8059135 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 132

Conread position: 1-456
Cow position: chr15:15346380-15345937 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 44

Conread position: 1-456
Cow position: chr15:21665011-21664568 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr15:24718066-24718498 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 33

Conread position: 1-456
Cow position: chr15:35752586-35752134 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 28

Conread position: 1-594
Cow position: chr15:4678990-4679565 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 1-594
Cow position: chr15:4950797-4951388 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 406
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 40, 25

Conread position: 1-594
Cow position: chr15:7545597-7546160 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 391
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 288, 33

Conread position: 2-456
Cow position: chr15:16287202-16286775 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 302
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 42

Conread position: 3-337
Cow position: chr15:46052418-46052740 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 63, 37

Conread position: 5-389
Cow position: chr15:51675452-51675823 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 17

Conread position: 5-451
Cow position: chr15:4927111-4927536 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 7

Conread position: 5-452
Cow position: chr15:1238402-1238852 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 146

Conread position: 6-394
Cow position: chr15:50253568-50253943 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 67, 35

Conread position: 6-422
Cow position: chr15:17148861-17149259 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 23

Conread position: 6-452
Cow position: chr15:4652098-4652537 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 309
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 70, 39

Conread position: 6-456
Cow position: chr15:31359617-31360035 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 28

Conread position: 6-459
Cow position: chr15:38981464-38981907 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 16

Conread position: 7-456
Cow position: chr15:18332091-18331662 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 137

Conread position: 8-438
Cow position: chr15:35646938-35646525 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 35

Conread position: 8-456
Cow position: chr15:2646916-2646478 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr15:3009104-3008671 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-456
Cow position: chr15:4197201-4197638 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr15:5010894-5010460 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 301
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 33

Conread position: 10-456
Cow position: chr15:1765041-1765489 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 12-456
Cow position: chr15:2013308-2013730 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 30

Conread position: 12-594
Cow position: chr15:6553077-6552493 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 50

Conread position: 14-466
Cow position: chr15:1782980-1783423 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 28

Conread position: 16-452
Cow position: chr15:20750138-20750558 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 17-433
Cow position: chr15:1773246-1773652 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr15:4765933-4766362 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 65

Conread position: 17-456
Cow position: chr15:6155196-6154755 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 28

Conread position: 17-456
Cow position: chr15:19737307-19736884 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 28

Conread position: 17-456
Cow position: chr15:50123186-50122760 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 22-286
Cow position: chr15:10478922-10478672 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 70

Conread position: 22-386
Cow position: chr15:51715666-51716015 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 263
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 110

Conread position: 24-456
Cow position: chr15:14581608-14581192 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 30-456
Cow position: chr15:2763564-2763966 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 275
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 114, 51

Conread position: 30-458
Cow position: chr15:4823227-4823629 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 121

Conread position: 36-386
Cow position: chr15:53299234-53299572 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 77

Conread position: 38-456
Cow position: chr15:9912462-9912060 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 115

Conread position: 39-427
Cow position: chr15:580199-580570 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 40-424
Cow position: chr15:24794592-24794965 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 7

Conread position: 47-383
Cow position: chr15:31860442-31860109 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 88

Conread position: 48-430
Cow position: chr15:611523-611148 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 20, 87

Conread position: 51-438
Cow position: chr15:3182285-3181906 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 275
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 31, 59

Conread position: 70-428
Cow position: chr15:7235048-7235399 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 255
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 82, 90

Conread position: 72-422
Cow position: chr15:12026974-12027318 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 215, 31

Conread position: 75-424
Cow position: chr15:17217320-17216993 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 248, 16

Conread position: 83-452
Cow position: chr15:3777863-3777518 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 238
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 85-456
Cow position: chr15:2901450-2901090 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 65

Conread position: 88-432
Cow position: chr15:329147-329482 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 201, 62

Conread position: 91-456
Cow position: chr15:25654252-25653895 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 254
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 198, 59

Conread position: 107-456
Cow position: chr15:18266941-18266604 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 239
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 45

Conread position: 112-456
Cow position: chr15:7563833-7564168 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 21

Conread position: 115-456
Cow position: chr15:4686572-4686900 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 24, 17

Conread position: 127-456
Cow position: chr15:20411452-20411769 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 23, 0

Conread position: 143-456
Cow position: chr15:4726075-4726373 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 211
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 144, 47

Conread position: 169-369
Cow position: chr15:13390955-13390757 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 14

Conread position: 186-456
Cow position: chr15:17036764-17036486 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 16

Conread position: 202-456
Cow position: chr15:51218643-51218895 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 49, 22

Conread position: 204-456
Cow position: chr15:9003290-9003052 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 19, 121

Conread position: 205-371
Cow position: chr15:23309980-23309818 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 150, 41

Conread position: 205-456
Cow position: chr15:6591199-6590945 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 178
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 204

Conread position: 205-456
Cow position: chr15:11626581-11626838 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 172
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 146

Conread position: 209-387
Cow position: chr15:20361164-20360986 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 6, 28

Conread position: 211-461
Cow position: chr15:26156766-26157010 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 136, 88

Conread position: 218-456
Cow position: chr15:523889-523647 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 40

Conread position: 242-451
Cow position: chr15:33122334-33122544 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 168

Conread position: 257-456
Cow position: chr15:4141763-4141563 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 133

Conread position: 272-456
Cow position: chr15:35898790-35898605 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 133

Conread position: 276-456
Cow position: chr15:106991-107172 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 129

Conread position: 285-461
Cow position: chr15:29343229-29343050 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 102

Conread position: 290-456
Cow position: chr15:6561593-6561758 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 113

Conread position: 290-456
Cow position: chr15:41659174-41659339 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 113

Show alignments to all cow chromosomes.