Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-360 |
| Cow position: | chr16:9209351-9209693 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-387 |
| Cow position: | chr16:19638449-19638816 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 1-389 |
| Cow position: | chr16:15477230-15477604 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 1-397 |
| Cow position: | chr16:3330326-3330710 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 1-397 |
| Cow position: | chr16:46500578-46500971 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 1-437 |
| Cow position: | chr16:17056582-17056163 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 1-452 |
| Cow position: | chr16:10438640-10439083 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-452 |
| Cow position: | chr16:43896886-43896437 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:406650-406208 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 1-456 |
| Cow position: | chr16:1567064-1566625 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:1860607-1861064 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 37 |
| Conread position: | 1-456 |
| Cow position: | chr16:2410576-2410100 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 42 |
| Conread position: | 1-456 |
| Cow position: | chr16:2726841-2726384 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:5485119-5485555 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:16270753-16270306 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:23252049-23251595 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:23535502-23535072 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:23671086-23671528 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 1-456 |
| Cow position: | chr16:23983684-23984129 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:25442019-25442458 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:27732992-27732553 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:29047411-29047851 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr16:40295786-40295332 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr16:51084539-51084986 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 1-590 |
| Cow position: | chr16:25171736-25172291 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 1-595 |
| Cow position: | chr16:28437090-28436515 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 153 |
| Conread position: | 3-371 |
| Cow position: | chr16:54726972-54727321 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 3-443 |
| Cow position: | chr16:39824326-39824741 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 3-451 |
| Cow position: | chr16:11782006-11781577 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 4-452 |
| Cow position: | chr16:49255829-49255408 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 38 |
| Conread position: | 4-594 |
| Cow position: | chr16:23808726-23809300 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 399 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 285, 37 |
| Conread position: | 6-451 |
| Cow position: | chr16:837713-838142 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 37 |
| Conread position: | 6-452 |
| Cow position: | chr16:31591522-31591094 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 6-456 |
| Cow position: | chr16:1432584-1433016 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 6-456 |
| Cow position: | chr16:15185465-15185908 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 7-456 |
| Cow position: | chr16:3088807-3088375 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 34 |
| Conread position: | 7-456 |
| Cow position: | chr16:4478576-4478138 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 7-456 |
| Cow position: | chr16:7676063-7675624 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 27 |
| Conread position: | 8-380 |
| Cow position: | chr16:11283987-11284350 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-380 |
| Cow position: | chr16:21186010-21186373 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-393 |
| Cow position: | chr16:26105668-26105277 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 163 |
| Conread position: | 8-426 |
| Cow position: | chr16:25189044-25189444 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 8-451 |
| Cow position: | chr16:37482024-37481606 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr16:5662226-5662668 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 8-456 |
| Cow position: | chr16:10375204-10374767 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 8-456 |
| Cow position: | chr16:25086011-25086441 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 8-456 |
| Cow position: | chr16:27593902-27594336 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr16:28196850-28196412 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 12-456 |
| Cow position: | chr16:2482737-2482306 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 31 |
| Conread position: | 18-286 |
| Cow position: | chr16:20331188-20331456 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 19-464 |
| Cow position: | chr16:25001892-25001453 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 28-452 |
| Cow position: | chr16:5890412-5890825 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 29-452 |
| Cow position: | chr16:25342373-25342796 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 30-386 |
| Cow position: | chr16:27714391-27714063 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 30-456 |
| Cow position: | chr16:25457057-25456652 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 15 |
| Conread position: | 37-444 |
| Cow position: | chr16:19779228-19778832 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 54 |
| Conread position: | 48-456 |
| Cow position: | chr16:34530735-34531127 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 283 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 72-451 |
| Cow position: | chr16:16520295-16519946 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 222, 22 |
| Conread position: | 76-390 |
| Cow position: | chr16:38023785-38024087 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 76-453 |
| Cow position: | chr16:48334107-48333748 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 85-452 |
| Cow position: | chr16:51038548-51038888 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 138, 83 |
| Conread position: | 88-456 |
| Cow position: | chr16:28470599-28470241 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 62 |
| Conread position: | 94-344 |
| Cow position: | chr16:25258306-25258540 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 112-454 |
| Cow position: | chr16:40557448-40557118 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 115-360 |
| Cow position: | chr16:25081272-25081521 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 99, 35 |
| Conread position: | 115-456 |
| Cow position: | chr16:19080468-19080799 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 144-385 |
| Cow position: | chr16:25933214-25933458 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 183-456 |
| Cow position: | chr16:52591120-52590852 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 193-461 |
| Cow position: | chr16:41754047-41753776 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 202-456 |
| Cow position: | chr16:41571966-41572218 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 202-588 |
| Cow position: | chr16:39366334-39365935 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 205-432 |
| Cow position: | chr16:1960034-1959810 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 170, 71 |
| Conread position: | 205-437 |
| Cow position: | chr16:32937099-32937332 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 207 |
| Conread position: | 209-456 |
| Cow position: | chr16:16228904-16229146 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 211-397 |
| Cow position: | chr16:10568238-10568418 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 12 |
| Conread position: | 211-398 |
| Cow position: | chr16:41562672-41562860 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 121 |
| Conread position: | 211-456 |
| Cow position: | chr16:7464901-7465146 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 21, 198 |
| Conread position: | 213-456 |
| Cow position: | chr16:5871479-5871716 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 162, 63 |
| Conread position: | 224-456 |
| Cow position: | chr16:5527789-5527556 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 190 |
| Conread position: | 231-429 |
| Cow position: | chr16:37480253-37480053 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 180 |
Show alignments to all cow chromosomes.