Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-235 |
| Cow position: | chr17:22133167-22133378 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 138, 33 |
| Conread position: | 1-418 |
| Cow position: | chr17:19020533-19020938 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 154 |
| Conread position: | 1-424 |
| Cow position: | chr17:1656889-1656490 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 1-437 |
| Cow position: | chr17:6120675-6121095 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 1-452 |
| Cow position: | chr17:1786979-1786565 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 313 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-452 |
| Cow position: | chr17:2078040-2077595 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 114 |
| Conread position: | 1-456 |
| Cow position: | chr17:6069514-6069946 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 42 |
| Conread position: | 1-456 |
| Cow position: | chr17:6260820-6261262 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr17:11086760-11086324 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 66 |
| Conread position: | 1-456 |
| Cow position: | chr17:14040083-14039632 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 1-456 |
| Cow position: | chr17:19267868-19267431 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 1-456 |
| Cow position: | chr17:40805770-40806210 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 44 |
| Conread position: | 3-360 |
| Cow position: | chr17:23919245-23919581 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 333, 38 |
| Conread position: | 5-456 |
| Cow position: | chr17:20099508-20099073 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 6-455 |
| Cow position: | chr17:24029038-24028602 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 6-456 |
| Cow position: | chr17:15851653-15852096 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 7-433 |
| Cow position: | chr17:33381601-33381205 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 297, 34 |
| Conread position: | 7-456 |
| Cow position: | chr17:14240465-14240908 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 8-402 |
| Cow position: | chr17:20390120-20389731 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-452 |
| Cow position: | chr17:43989467-43989901 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 8-456 |
| Cow position: | chr17:182542-182976 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr17:2247115-2246683 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 172, 51 |
| Conread position: | 8-456 |
| Cow position: | chr17:2263074-2263542 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 8-456 |
| Cow position: | chr17:9080455-9080017 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr17:14216061-14215623 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 8-456 |
| Cow position: | chr17:24783127-24783565 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 9-360 |
| Cow position: | chr17:42266384-42266709 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 9-456 |
| Cow position: | chr17:3707816-3707386 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 10-456 |
| Cow position: | chr17:15436750-15437187 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 14-456 |
| Cow position: | chr17:11783826-11784261 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 38 |
| Conread position: | 17-456 |
| Cow position: | chr17:15142382-15141952 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 17-456 |
| Cow position: | chr17:23323471-23323045 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 17-458 |
| Cow position: | chr17:2580598-2581027 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 119 |
| Conread position: | 18-456 |
| Cow position: | chr17:33284857-33284450 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 30-397 |
| Cow position: | chr17:20086777-20086421 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 35-456 |
| Cow position: | chr17:39049206-39049618 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 116 |
| Conread position: | 37-379 |
| Cow position: | chr17:2149437-2149754 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 17, 114 |
| Conread position: | 52-400 |
| Cow position: | chr17:14296260-14295921 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 23 |
| Conread position: | 59-456 |
| Cow position: | chr17:21769992-21769603 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 8, 75 |
| Conread position: | 79-456 |
| Cow position: | chr17:23038618-23038966 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 296, 22 |
| Conread position: | 112-436 |
| Cow position: | chr17:14936904-14936588 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 7, 74 |
| Conread position: | 191-456 |
| Cow position: | chr17:28027364-28027101 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 202-456 |
| Cow position: | chr17:3640754-3640502 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 205-456 |
| Cow position: | chr17:2555408-2555156 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 212-443 |
| Cow position: | chr17:4675266-4675494 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 214-454 |
| Cow position: | chr17:1881460-1881693 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 221-452 |
| Cow position: | chr17:1704037-1704270 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 228 |
| Conread position: | 224-456 |
| Cow position: | chr17:733174-732939 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 139 |
| Conread position: | 298-456 |
| Cow position: | chr17:13967173-13967330 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 105 |
Show alignments to all cow chromosomes.