Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-383 |
| Cow position: | chr18:56013750-56014125 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 1-451 |
| Cow position: | chr18:19405401-19404978 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 1-451 |
| Cow position: | chr18:54170340-54169899 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 1-452 |
| Cow position: | chr18:27837140-27836698 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 1-452 |
| Cow position: | chr18:29238068-29238499 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 33 |
| Conread position: | 1-456 |
| Cow position: | chr18:14131563-14132002 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:14417149-14417578 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr18:16089306-16089731 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:16175446-16175009 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:23798819-23799260 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 33 |
| Conread position: | 1-456 |
| Cow position: | chr18:25352426-25352871 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:28972714-28972275 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 28 |
| Conread position: | 1-456 |
| Cow position: | chr18:29865441-29864999 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:41839642-41839198 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr18:52652079-52652525 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr18:54005002-54004561 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 2-457 |
| Cow position: | chr18:13139965-13139508 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 39 |
| Conread position: | 3-247 |
| Cow position: | chr18:42515370-42515610 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 3-402 |
| Cow position: | chr18:12237400-12237755 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 3-452 |
| Cow position: | chr18:29046768-29046350 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 213, 38 |
| Conread position: | 4-399 |
| Cow position: | chr18:8101252-8100859 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 8-387 |
| Cow position: | chr18:16392911-16392552 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 102 |
| Conread position: | 8-456 |
| Cow position: | chr18:19353537-19353978 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr18:47742679-47743118 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 11-402 |
| Cow position: | chr18:16276784-16276409 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 12-456 |
| Cow position: | chr18:54022951-54022521 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 18-293 |
| Cow position: | chr18:36255738-36255477 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 20-398 |
| Cow position: | chr18:38343102-38342734 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 14 |
| Conread position: | 24-456 |
| Cow position: | chr18:51482062-51482467 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 29-355 |
| Cow position: | chr18:51661538-51661854 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 104 |
| Conread position: | 29-397 |
| Cow position: | chr18:24574752-24574399 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 29-437 |
| Cow position: | chr18:54271678-54272071 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 36-374 |
| Cow position: | chr18:46867697-46867387 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 115 |
| Conread position: | 53-452 |
| Cow position: | chr18:34043831-34044203 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 78-414 |
| Cow position: | chr18:16137603-16137279 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 210, 72 |
| Conread position: | 80-423 |
| Cow position: | chr18:46876083-46875761 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 70 |
| Conread position: | 93-384 |
| Cow position: | chr18:18851639-18851912 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 202, 56 |
| Conread position: | 95-456 |
| Cow position: | chr18:27988446-27988797 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 8, 56 |
| Conread position: | 115-456 |
| Cow position: | chr18:36509897-36510228 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 236 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 165, 35 |
| Conread position: | 124-456 |
| Cow position: | chr18:51694992-51695313 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 170, 28 |
| Conread position: | 191-452 |
| Cow position: | chr18:17672458-17672196 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 195-456 |
| Cow position: | chr18:35054487-35054740 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 202-357 |
| Cow position: | chr18:18528558-18528705 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 202-456 |
| Cow position: | chr18:26245265-26245011 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 212-397 |
| Cow position: | chr18:45184649-45184838 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 213-456 |
| Cow position: | chr18:33752085-33752309 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 162, 24 |
| Conread position: | 214-448 |
| Cow position: | chr18:37558910-37559140 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 217-404 |
| Cow position: | chr18:33270294-33270482 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 225-397 |
| Cow position: | chr18:40316050-40315878 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 276-456 |
| Cow position: | chr18:5534444-5534621 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 20 |
Show alignments to all cow chromosomes.