Cow genome map

Conread name: Liv1-LVRM10127A01

Conread position: 1-261
Cow position: chr2:51998304-51998060 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 1-315
Cow position: chr2:45918939-45918619 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 67

Conread position: 1-383
Cow position: chr2:32434703-32434334 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 261
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 102, 150

Conread position: 1-383
Cow position: chr2:55483530-55483166 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 62

Conread position: 1-423
Cow position: chr2:36029752-36029363 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 279
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 31

Conread position: 1-438
Cow position: chr2:34473955-34473553 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 300
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 64, 25

Conread position: 1-452
Cow position: chr2:289165-288733 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 33

Conread position: 1-455
Cow position: chr2:1691592-1692021 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 28

Conread position: 1-456
Cow position: chr2:174944-174508 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr2:574211-574649 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 33

Conread position: 1-456
Cow position: chr2:8119157-8119603 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 1-456
Cow position: chr2:10185613-10185169 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr2:11158507-11158062 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-456
Cow position: chr2:12223659-12223219 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr2:16900874-16901314 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr2:24925180-24925627 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr2:25887928-25887490 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr2:28648983-28648551 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 44

Conread position: 1-456
Cow position: chr2:28793866-28794297 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 44

Conread position: 1-456
Cow position: chr2:34051773-34052217 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr2:35356633-35357062 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 45

Conread position: 1-456
Cow position: chr2:40453527-40453949 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 1-456
Cow position: chr2:41180755-41181172 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 25

Conread position: 1-456
Cow position: chr2:41687385-41687827 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 40

Conread position: 1-456
Cow position: chr2:42332272-42331831 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 318
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 61, 45

Conread position: 1-456
Cow position: chr2:44934359-44933930 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 312
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 66

Conread position: 1-456
Cow position: chr2:44990684-44990242 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 32

Conread position: 1-456
Cow position: chr2:45967400-45966973 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 39

Conread position: 1-458
Cow position: chr2:13045098-13044647 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 49

Conread position: 1-461
Cow position: chr2:45916214-45915775 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 1-592
Cow position: chr2:34564044-34563493 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 385
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 287, 40

Conread position: 1-594
Cow position: chr2:53330377-53330970 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 2-429
Cow position: chr2:47811464-47811878 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 43

Conread position: 2-456
Cow position: chr2:19011969-19012423 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 164

Conread position: 2-456
Cow position: chr2:51617872-51618322 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 32

Conread position: 3-464
Cow position: chr2:387163-386718 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 38

Conread position: 6-452
Cow position: chr2:80292134-80291708 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 7-454
Cow position: chr2:42670084-42669652 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 8-452
Cow position: chr2:54738113-54738543 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr2:247253-246824 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-456
Cow position: chr2:3323939-3323506 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr2:26905132-26904696 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr2:26922048-26922486 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr2:39422244-39422684 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 126

Conread position: 8-456
Cow position: chr2:52617097-52617535 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr2:57336167-57336604 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-594
Cow position: chr2:41048428-41047853 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 10-456
Cow position: chr2:17424477-17424918 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 10

Conread position: 12-450
Cow position: chr2:6962144-6962564 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 28

Conread position: 12-452
Cow position: chr2:65937612-65937171 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 144

Conread position: 12-452
Cow position: chr2:81257794-81258232 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 17

Conread position: 16-387
Cow position: chr2:64224109-64223744 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 39

Conread position: 16-432
Cow position: chr2:20030054-20030448 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 276
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 62, 134

Conread position: 17-444
Cow position: chr2:28619322-28618923 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 9

Conread position: 17-452
Cow position: chr2:9958436-9958018 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 300
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr2:364437-364008 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr2:9908545-9908973 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr2:10611015-10610586 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 303
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 50, 28

Conread position: 17-456
Cow position: chr2:47037803-47037374 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 17

Conread position: 20-456
Cow position: chr2:72187850-72187443 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 21

Conread position: 23-388
Cow position: chr2:25766663-25766996 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 24-452
Cow position: chr2:47602628-47602210 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 111

Conread position: 28-456
Cow position: chr2:19225521-19225924 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 105

Conread position: 29-456
Cow position: chr2:53540583-53540994 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 302
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 35, 46

Conread position: 30-454
Cow position: chr2:6673889-6674284 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 30-456
Cow position: chr2:49625261-49624861 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 279
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 36, 64

Conread position: 30-456
Cow position: chr2:49628420-49628836 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 82

Conread position: 31-283
Cow position: chr2:49800884-49800626 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 37, 77

Conread position: 31-456
Cow position: chr2:32656296-32656700 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 289
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 262, 31

Conread position: 34-468
Cow position: chr2:16074880-16074469 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 298
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 10, 26

Conread position: 48-456
Cow position: chr2:2087505-2087110 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 103

Conread position: 52-442
Cow position: chr2:77129839-77129468 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 102

Conread position: 54-456
Cow position: chr2:32458373-32458007 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 70-456
Cow position: chr2:25743227-25743597 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 266
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 158, 36

Conread position: 76-357
Cow position: chr2:43445641-43445909 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 63, 56

Conread position: 76-387
Cow position: chr2:1114222-1114518 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 147, 74

Conread position: 95-402
Cow position: chr2:20872786-20872477 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 100, 12

Conread position: 101-456
Cow position: chr2:10264689-10264351 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 188, 49

Conread position: 104-452
Cow position: chr2:6006122-6005790 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 237
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 185, 46

Conread position: 105-590
Cow position: chr2:6880076-6880541 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 326
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 66, 29

Conread position: 120-456
Cow position: chr2:24471892-24471572 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 174, 30

Conread position: 123-456
Cow position: chr2:52063504-52063819 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 0

Conread position: 131-456
Cow position: chr2:16291430-16291745 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 149, 65

Conread position: 142-396
Cow position: chr2:72548134-72547890 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 138, 30

Conread position: 142-456
Cow position: chr2:64768441-64768132 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 217
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 37, 66

Conread position: 145-338
Cow position: chr2:50404927-50405116 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 132, 54

Conread position: 186-456
Cow position: chr2:50078355-50078627 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 37, 16

Conread position: 191-456
Cow position: chr2:36082599-36082861 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 28, 78

Conread position: 202-452
Cow position: chr2:36992977-36993225 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 76

Conread position: 207-456
Cow position: chr2:5903530-5903282 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 22, 80

Conread position: 208-373
Cow position: chr2:7629518-7629688 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 208-397
Cow position: chr2:58988574-58988773 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 209-467
Cow position: chr2:54693762-54694013 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 188
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 6, 41

Conread position: 211-402
Cow position: chr2:56801818-56801634 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 9

Conread position: 211-456
Cow position: chr2:32065224-32064980 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 78, 197

Conread position: 213-456
Cow position: chr2:41154629-41154876 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 202

Conread position: 228-452
Cow position: chr2:211455-211236 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 61, 23

Conread position: 231-398
Cow position: chr2:31448676-31448844 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 59, 144

Conread position: 231-456
Cow position: chr2:24926252-24926476 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 25

Conread position: 234-397
Cow position: chr2:11558619-11558788 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 0

Conread position: 234-437
Cow position: chr2:12696631-12696427 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 176

Show alignments to all cow chromosomes.