Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-284 |
| Cow position: | chr21:21915933-21916207 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 41, 19 |
| Conread position: | 1-315 |
| Cow position: | chr21:5840017-5839712 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-337 |
| Cow position: | chr21:10284138-10284460 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 1-428 |
| Cow position: | chr21:2417462-2417873 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 1-437 |
| Cow position: | chr21:37372484-37372905 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 1-452 |
| Cow position: | chr21:147178-147607 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-455 |
| Cow position: | chr21:47942195-47942637 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 25 |
| Conread position: | 1-456 |
| Cow position: | chr21:360907-361349 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1-456 |
| Cow position: | chr21:2512093-2512539 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr21:3780015-3780463 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 1-456 |
| Cow position: | chr21:11506857-11507303 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 1-456 |
| Cow position: | chr21:27069715-27069275 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 44 |
| Conread position: | 1-456 |
| Cow position: | chr21:27284714-27285149 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr21:40270426-40269983 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr21:47646578-47647020 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 1-458 |
| Cow position: | chr21:45786183-45785765 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 1-590 |
| Cow position: | chr21:28736429-28736990 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 33 |
| Conread position: | 1-593 |
| Cow position: | chr21:36979670-36979096 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 40 |
| Conread position: | 2-402 |
| Cow position: | chr21:21519847-21520251 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 7-452 |
| Cow position: | chr21:31515064-31514631 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 8-348 |
| Cow position: | chr21:27036146-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-430 |
| Cow position: | chr21:4185179-4185578 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 33 |
| Conread position: | 8-433 |
| Cow position: | chr21:39426314-39426738 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr21:34822959-34822521 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 10-386 |
| Cow position: | chr21:27567012-27567367 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 265 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 17-456 |
| Cow position: | chr21:10567965-10568388 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 17-456 |
| Cow position: | chr21:12054756-12054328 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr21:26635892-26635468 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 17-456 |
| Cow position: | chr21:30598218-30597781 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 28-456 |
| Cow position: | chr21:5018416-5018829 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 39 |
| Conread position: | 29-456 |
| Cow position: | chr21:42914637-42915054 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 39, 123 |
| Conread position: | 30-451 |
| Cow position: | chr21:28985380-28985779 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 121 |
| Conread position: | 35-456 |
| Cow position: | chr21:1286927-1286526 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 125 |
| Conread position: | 35-557 |
| Cow position: | chr21:2539821-2539295 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 350 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 8 |
| Conread position: | 36-452 |
| Cow position: | chr21:29004234-29003852 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 70 |
| Conread position: | 38-402 |
| Cow position: | chr21:20743329-20742991 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 39-456 |
| Cow position: | chr21:4564751-4565150 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 47-559 |
| Cow position: | chr21:6625814-6626317 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 129 |
| Conread position: | 48-482 |
| Cow position: | chr21:23804815-23804411 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 286, 47 |
| Conread position: | 52-464 |
| Cow position: | chr21:38023424-38023821 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 111-468 |
| Cow position: | chr21:25783208-25783558 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 105, 39 |
| Conread position: | 112-456 |
| Cow position: | chr21:19612113-19612449 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 143-442 |
| Cow position: | chr21:41404699-41404991 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 147, 49 |
| Conread position: | 183-456 |
| Cow position: | chr21:21943168-21942892 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 191-428 |
| Cow position: | chr21:31250439-31250672 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 102, 10 |
| Conread position: | 191-456 |
| Cow position: | chr21:2880398-2880136 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 201-383 |
| Cow position: | chr21:40080829-40081015 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 202-562 |
| Cow position: | chr21:37149456-37149799 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 205-442 |
| Cow position: | chr21:405713-405483 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 205-456 |
| Cow position: | chr21:38801870-38802126 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 204 |
| Conread position: | 209-456 |
| Cow position: | chr21:28613765-28614017 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 5, 200 |
| Conread position: | 210-390 |
| Cow position: | chr21:21024909-21025090 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 210-443 |
| Cow position: | chr21:24085356-24085126 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 215-456 |
| Cow position: | chr21:34655287-34655517 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 221-482 |
| Cow position: | chr21:468357-468616 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 188, 9 |
| Conread position: | 232-456 |
| Cow position: | chr21:30563138-30563359 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 174 |
| Conread position: | 270-456 |
| Cow position: | chr21:6414522-6414335 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 135 |
Show alignments to all cow chromosomes.