Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-352 |
| Cow position: | chr24:19640842-19641185 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 250, 64 |
| Conread position: | 1-387 |
| Cow position: | chr24:35869394-35869033 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 25 |
| Conread position: | 1-428 |
| Cow position: | chr24:13179857-13179444 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 295 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 1-456 |
| Cow position: | chr24:147451-147008 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 1-456 |
| Cow position: | chr24:6353309-6353741 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 1-456 |
| Cow position: | chr24:6407197-6407636 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr24:12087367-12087803 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 150 |
| Conread position: | 1-456 |
| Cow position: | chr24:12334597-12334127 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 1-456 |
| Cow position: | chr24:19834556-19835010 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr24:35840903-35840482 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 40 |
| Conread position: | 2-456 |
| Cow position: | chr24:14383476-14383025 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 151 |
| Conread position: | 6-456 |
| Cow position: | chr24:4414365-4413943 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 39 |
| Conread position: | 7-456 |
| Cow position: | chr24:9545230-9545658 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 27 |
| Conread position: | 8-397 |
| Cow position: | chr24:29305147-29304763 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-452 |
| Cow position: | chr24:19702667-19703094 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 33 |
| Conread position: | 8-456 |
| Cow position: | chr24:5992059-5991622 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr24:6023939-6023484 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr24:11152071-11151633 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr24:23504696-23504256 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 12-456 |
| Cow position: | chr24:33934559-33934991 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 31 |
| Conread position: | 13-456 |
| Cow position: | chr24:13233429-13233862 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 16-456 |
| Cow position: | chr24:38638712-38639126 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 275, 28 |
| Conread position: | 17-452 |
| Cow position: | chr24:9090876-9090452 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 17-456 |
| Cow position: | chr24:6435659-6436087 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 17-456 |
| Cow position: | chr24:7062717-7063146 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr24:9187567-9187138 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr24:12699642-12699220 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 17-456 |
| Cow position: | chr24:13044466-13044024 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 17-456 |
| Cow position: | chr24:13189365-13189776 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 26 |
| Conread position: | 17-456 |
| Cow position: | chr24:44018683-44019112 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 18-398 |
| Cow position: | chr24:14871142-14870779 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 19-430 |
| Cow position: | chr24:14389355-14388961 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 30-384 |
| Cow position: | chr24:1450616-1450938 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 44-404 |
| Cow position: | chr24:36709781-36710121 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 109 |
| Conread position: | 52-452 |
| Cow position: | chr24:12163154-12163534 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 63-442 |
| Cow position: | chr24:38585898-38585525 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 121 |
| Conread position: | 63-456 |
| Cow position: | chr24:16561103-16560710 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 87 |
| Conread position: | 89-432 |
| Cow position: | chr24:16097774-16098105 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 94-452 |
| Cow position: | chr24:16875965-16875606 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 114, 7 |
| Conread position: | 111-456 |
| Cow position: | chr24:25437564-25437882 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 118-373 |
| Cow position: | chr24:10222893-10222652 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 142-407 |
| Cow position: | chr24:17279085-17278828 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 147, 37 |
| Conread position: | 143-387 |
| Cow position: | chr24:4044951-4044716 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 130, 43 |
| Conread position: | 186-456 |
| Cow position: | chr24:8606148-8606420 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 204-450 |
| Cow position: | chr24:42584400-42584162 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 19 |
| Conread position: | 205-456 |
| Cow position: | chr24:310216-310471 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 210-437 |
| Cow position: | chr24:12204983-12204759 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 225-456 |
| Cow position: | chr24:40468425-40468651 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 231-456 |
| Cow position: | chr24:12127735-12127507 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 177 |
| Conread position: | 237-456 |
| Cow position: | chr24:16083397-16083177 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 173 |
| Conread position: | 254-456 |
| Cow position: | chr24:14755399-14755602 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 156 |
Show alignments to all cow chromosomes.