Cow genome map
| Conread name: | Liv1-LVRM10127A01 |
| Conread position: | 1-282 |
| Cow position: | chr4:41333496-41333761 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-302 |
| Cow position: | chr4:54239779-54240061 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 1-326 |
| Cow position: | chr4:967271-966952 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 40 |
| Conread position: | 1-396 |
| Cow position: | chr4:34178430-34178051 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 1-397 |
| Cow position: | chr4:19005504-19005120 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 1-404 |
| Cow position: | chr4:6489556-6489157 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1-452 |
| Cow position: | chr4:12588138-12588570 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-452 |
| Cow position: | chr4:36897183-36897618 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-452 |
| Cow position: | chr4:47522140-47522600 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 315 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 1-456 |
| Cow position: | chr4:1049450-1049017 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 33 |
| Conread position: | 1-456 |
| Cow position: | chr4:6206413-6206852 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 25 |
| Conread position: | 1-456 |
| Cow position: | chr4:10882356-10882794 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 110 |
| Conread position: | 1-456 |
| Cow position: | chr4:13494137-13494572 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr4:16639420-16639856 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 42 |
| Conread position: | 1-456 |
| Cow position: | chr4:25598690-25598239 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr4:26876973-26876537 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr4:31564497-31564037 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 1-456 |
| Cow position: | chr4:60263354-60262916 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 1-456 |
| Cow position: | chr4:67682000-67682443 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 2-387 |
| Cow position: | chr4:22474158-22474529 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 39 |
| Conread position: | 3-373 |
| Cow position: | chr4:11110470-11110117 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 3-374 |
| Cow position: | chr4:31756450-31756813 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 39 |
| Conread position: | 3-452 |
| Cow position: | chr4:46665335-46665775 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 6-387 |
| Cow position: | chr4:44924718-44924359 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 14 |
| Conread position: | 6-428 |
| Cow position: | chr4:42405417-42405830 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 6-456 |
| Cow position: | chr4:12240405-12239978 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 6-456 |
| Cow position: | chr4:17925151-17924715 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 39 |
| Conread position: | 6-456 |
| Cow position: | chr4:43881919-43882351 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 39 |
| Conread position: | 7-456 |
| Cow position: | chr4:43318827-43318390 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 8-456 |
| Cow position: | chr4:99402-98971 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr4:159976-160403 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 8-456 |
| Cow position: | chr4:4416873-4417303 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr4:5444018-5443579 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 8-456 |
| Cow position: | chr4:17093051-17092616 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 8-456 |
| Cow position: | chr4:45106274-45106712 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 9-464 |
| Cow position: | chr4:4178076-4178501 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 20 |
| Conread position: | 12-456 |
| Cow position: | chr4:33072000-33071588 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 268, 33 |
| Conread position: | 14-402 |
| Cow position: | chr4:50975447-50975822 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 14-456 |
| Cow position: | chr4:41959716-41960146 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 16-456 |
| Cow position: | chr4:41955583-41956009 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 17-433 |
| Cow position: | chr4:18423700-18423293 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 17-456 |
| Cow position: | chr4:18337676-18338100 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 17-456 |
| Cow position: | chr4:32212987-32213418 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 24-297 |
| Cow position: | chr4:49939757-49939489 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 27-428 |
| Cow position: | chr4:14755833-14755453 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 40, 7 |
| Conread position: | 28-427 |
| Cow position: | chr4:52268953-52268562 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 29-320 |
| Cow position: | chr4:47253504-47253225 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 7, 123 |
| Conread position: | 38-418 |
| Cow position: | chr4:9647220-9647568 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 54-389 |
| Cow position: | chr4:41191744-41191420 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 97 |
| Conread position: | 62-385 |
| Cow position: | chr4:41428178-41428488 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 115-456 |
| Cow position: | chr4:9355298-9355625 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 142-456 |
| Cow position: | chr4:33494492-33494801 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 183-442 |
| Cow position: | chr4:13321481-13321228 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 186-452 |
| Cow position: | chr4:42926063-42925796 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 191-456 |
| Cow position: | chr4:31638938-31638679 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 194-456 |
| Cow position: | chr4:65665416-65665148 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 216 |
| Conread position: | 199-450 |
| Cow position: | chr4:20604701-20604932 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 11, 72 |
| Conread position: | 203-398 |
| Cow position: | chr4:49716778-49716971 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 203-452 |
| Cow position: | chr4:6519824-6520054 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 206-402 |
| Cow position: | chr4:58410705-58410893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 178, 85 |
| Conread position: | 213-456 |
| Cow position: | chr4:21359232-21359472 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 225-456 |
| Cow position: | chr4:17502317-17502085 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 70, 185 |
| Conread position: | 234-456 |
| Cow position: | chr4:14386844-14387067 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 60, 171 |
| Conread position: | 234-594 |
| Cow position: | chr4:27334954-27335301 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 60, 156 |
| Conread position: | 237-456 |
| Cow position: | chr4:28653466-28653246 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 168 |
| Conread position: | 257-456 |
| Cow position: | chr4:604676-604876 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 153 |
| Conread position: | 268-456 |
| Cow position: | chr4:30472269-30472459 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 268-456 |
| Cow position: | chr4:34221801-34221986 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 276-456 |
| Cow position: | chr4:3356866-3356687 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 99, 132 |
Show alignments to all cow chromosomes.