Cow genome map

Conread name: Liv1-LVRM10127A01

Conread position: 1-351
Cow position: chr5:29434812-29434484 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 251
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 15, 43

Conread position: 1-386
Cow position: chr5:41527887-41527517 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 40

Conread position: 1-389
Cow position: chr5:14784451-14784090 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 302, 28

Conread position: 1-398
Cow position: chr5:40788970-40789355 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 286
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 67, 40

Conread position: 1-402
Cow position: chr5:1341128-1340734 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-423
Cow position: chr5:31100518-31100113 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 121

Conread position: 1-432
Cow position: chr5:23669223-23668812 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 27

Conread position: 1-452
Cow position: chr5:54791728-54791287 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 1-452
Cow position: chr5:55628896-55629332 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-454
Cow position: chr5:4070113-4070565 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-455
Cow position: chr5:45701220-45701657 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 39

Conread position: 1-455
Cow position: chr5:51308955-51308512 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 33

Conread position: 1-456
Cow position: chr5:3503201-3502758 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 44

Conread position: 1-456
Cow position: chr5:4386148-4386586 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 42

Conread position: 1-456
Cow position: chr5:6153998-6153549 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr5:10775364-10774914 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 40

Conread position: 1-456
Cow position: chr5:10855911-10855468 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 42

Conread position: 1-456
Cow position: chr5:15375621-15376034 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 313
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 280, 40

Conread position: 1-456
Cow position: chr5:18400786-18400349 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-456
Cow position: chr5:18885625-18885182 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 33

Conread position: 1-456
Cow position: chr5:30580243-30580693 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 112

Conread position: 1-456
Cow position: chr5:34697509-34697946 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 49

Conread position: 1-456
Cow position: chr5:37733252-37733698 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 45

Conread position: 1-456
Cow position: chr5:41960829-41960397 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 43

Conread position: 1-456
Cow position: chr5:48807834-48807384 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr5:57481634-57481190 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr5:64781111-64780665 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 2-385
Cow position: chr5:41554430-41554059 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 265
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 39

Conread position: 2-397
Cow position: chr5:60716703-60716324 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 268
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 88, 39

Conread position: 2-428
Cow position: chr5:29767035-29767444 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 39

Conread position: 3-373
Cow position: chr5:23686985-23686634 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 3-426
Cow position: chr5:62413883-62414290 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 271
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 10

Conread position: 4-441
Cow position: chr5:7143139-7142731 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 255
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 122, 0

Conread position: 6-456
Cow position: chr5:2915359-2915783 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 28

Conread position: 6-456
Cow position: chr5:18560493-18560058 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 37

Conread position: 7-316
Cow position: chr5:53625012-53624714 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 60, 34

Conread position: 8-452
Cow position: chr5:12731798-12731370 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-452
Cow position: chr5:27908357-27907926 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 33

Conread position: 8-456
Cow position: chr5:988150-987719 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr5:10842467-10842032 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 37

Conread position: 8-456
Cow position: chr5:18121571-18121133 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 35

Conread position: 8-456
Cow position: chr5:26078282-26077844 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 105

Conread position: 8-456
Cow position: chr5:31707475-31707912 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr5:32773677-32774114 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr5:35301009-35301447 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 143

Conread position: 8-456
Cow position: chr5:59061548-59061985 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 9-299
Cow position: chr5:29670067-29670349 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 62, 33

Conread position: 9-445
Cow position: chr5:21116666-21117095 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 288
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 284, 50

Conread position: 10-456
Cow position: chr5:47830165-47829728 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 141

Conread position: 14-437
Cow position: chr5:42505923-42506335 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 15

Conread position: 14-452
Cow position: chr5:3965365-3965794 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 15-386
Cow position: chr5:40923720-40923366 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 25

Conread position: 16-282
Cow position: chr5:52613036-52612783 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 122, 25

Conread position: 16-456
Cow position: chr5:46777313-46777742 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 17-456
Cow position: chr5:4757256-4756834 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr5:18664704-18665115 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 300
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr5:23959408-23958981 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr5:49519481-49519897 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 17

Conread position: 18-434
Cow position: chr5:49072731-49072336 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 278
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 46, 11

Conread position: 30-344
Cow position: chr5:43193474-43193174 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 22

Conread position: 30-456
Cow position: chr5:7274777-7275183 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 86

Conread position: 35-436
Cow position: chr5:2738835-2739227 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 15

Conread position: 38-456
Cow position: chr5:23229934-23230333 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 274
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 29, 44

Conread position: 54-383
Cow position: chr5:18273718-18274036 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 13, 97

Conread position: 59-456
Cow position: chr5:18549117-18549511 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 274
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 91

Conread position: 61-576
Cow position: chr5:46645907-46646423 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 12

Conread position: 63-456
Cow position: chr5:10813784-10813401 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 87

Conread position: 73-383
Cow position: chr5:27003212-27003514 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 232
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 206, 59

Conread position: 113-456
Cow position: chr5:61081197-61080861 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 261, 17

Conread position: 115-464
Cow position: chr5:52434757-52435094 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 240
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 170, 66

Conread position: 134-387
Cow position: chr5:11115713-11115472 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 138-456
Cow position: chr5:55653803-55653496 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 222
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 142, 12

Conread position: 150-384
Cow position: chr5:53624779-53624549 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 136
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 138, 0

Conread position: 161-441
Cow position: chr5:13046707-13046993 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 33, 49

Conread position: 166-456
Cow position: chr5:9038078-9037792 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 30

Conread position: 180-452
Cow position: chr5:34189986-34190259 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 17

Conread position: 187-375
Cow position: chr5:40757540-40757725 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 11

Conread position: 198-456
Cow position: chr5:35527034-35527277 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 29

Conread position: 200-536
Cow position: chr5:16917384-16917055 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 121

Conread position: 202-452
Cow position: chr5:53703124-53702883 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 141

Conread position: 202-456
Cow position: chr5:24295712-24295963 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 13, 36

Conread position: 203-453
Cow position: chr5:69622680-69622936 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 6, 43

Conread position: 205-456
Cow position: chr5:53945938-53946178 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 170, 127

Conread position: 207-455
Cow position: chr5:54620150-54620392 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 84, 96

Conread position: 209-406
Cow position: chr5:18114479-18114280 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 6, 149

Conread position: 209-452
Cow position: chr5:34298025-34298253 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 19, 0

Conread position: 255-466
Cow position: chr5:62823645-62823845 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 129, 21

Show alignments to all cow chromosomes.