Cow genome map

Conread name: Liv1-LVRM10127A01

Conread position: 1-333
Cow position: chr6:60931731-60932053 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 13

Conread position: 1-335
Cow position: chr6:15278769-15278449 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-383
Cow position: chr6:44262433-44262060 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 139

Conread position: 1-386
Cow position: chr6:7178242-7177868 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 26

Conread position: 1-386
Cow position: chr6:29312546-29312924 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 33

Conread position: 1-398
Cow position: chr6:11273854-11273477 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 271
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 361, 40

Conread position: 1-427
Cow position: chr6:27471625-27472033 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 287
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 66, 25

Conread position: 1-451
Cow position: chr6:1535530-1535097 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 42

Conread position: 1-452
Cow position: chr6:50562-50121 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 150

Conread position: 1-452
Cow position: chr6:10632600-10633024 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 40

Conread position: 1-452
Cow position: chr6:40553529-40553098 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-452
Cow position: chr6:41228490-41228926 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 1-452
Cow position: chr6:51731135-51731563 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 44

Conread position: 1-455
Cow position: chr6:15140132-15139688 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr6:703262-703698 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 44

Conread position: 1-456
Cow position: chr6:1821568-1821140 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr6:3276327-3275881 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr6:5948737-5948295 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 25

Conread position: 1-456
Cow position: chr6:8203230-8203676 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 44

Conread position: 1-456
Cow position: chr6:17047098-17047546 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr6:21973715-21974157 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 31

Conread position: 1-456
Cow position: chr6:25360090-25360523 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 304
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 70, 39

Conread position: 1-456
Cow position: chr6:25792712-25792270 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr6:28133958-28134391 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 91

Conread position: 1-456
Cow position: chr6:34891079-34890639 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr6:35875667-35875224 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 44

Conread position: 1-456
Cow position: chr6:39333824-39333386 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-456
Cow position: chr6:40866279-40865834 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 1-456
Cow position: chr6:55542219-55541769 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-595
Cow position: chr6:15926523-15925957 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 2-451
Cow position: chr6:27333039-27333475 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 310
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 27

Conread position: 2-452
Cow position: chr6:66546534-66546959 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 43

Conread position: 3-299
Cow position: chr6:32448863-32448567 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 38

Conread position: 3-395
Cow position: chr6:58065784-58066160 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 31

Conread position: 4-432
Cow position: chr6:33899201-33898805 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 285
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 169, 22

Conread position: 5-452
Cow position: chr6:30273845-30273411 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 5

Conread position: 6-431
Cow position: chr6:58027724-58028135 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 28

Conread position: 6-456
Cow position: chr6:3487381-3486937 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 37

Conread position: 6-456
Cow position: chr6:8760245-8759811 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 39

Conread position: 8-360
Cow position: chr6:9264140-9264483 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-397
Cow position: chr6:3784819-3785203 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr6:13944961-13945399 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-456
Cow position: chr6:16053159-16053597 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr6:28187765-28187333 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 33

Conread position: 8-456
Cow position: chr6:40276139-40276569 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 21

Conread position: 8-456
Cow position: chr6:43618775-43619210 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 33

Conread position: 8-456
Cow position: chr6:44149505-44149061 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr6:58601535-58601965 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-456
Cow position: chr6:65820921-65820484 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 33

Conread position: 8-509
Cow position: chr6:50646132-50645641 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-594
Cow position: chr6:17597254-17596692 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 389
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 63, 32

Conread position: 10-594
Cow position: chr6:40316639-40317196 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 379
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 50, 31

Conread position: 14-456
Cow position: chr6:28490505-28490081 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 308
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 125, 27

Conread position: 16-397
Cow position: chr6:64717085-64717455 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 27

Conread position: 16-456
Cow position: chr6:27170639-27171067 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 25

Conread position: 17-452
Cow position: chr6:45587010-45587434 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 24

Conread position: 17-452
Cow position: chr6:68027976-68028408 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr6:2375747-2376166 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 116

Conread position: 17-456
Cow position: chr6:39910395-39910820 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr6:40379572-40379144 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 12

Conread position: 17-473
Cow position: chr6:2877626-2877181 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 22-428
Cow position: chr6:66232874-66233264 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 19

Conread position: 24-429
Cow position: chr6:28169969-28170369 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 19

Conread position: 28-429
Cow position: chr6:28104788-28104404 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 28-456
Cow position: chr6:65842686-65843102 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 84

Conread position: 30-357
Cow position: chr6:13316398-13316077 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 37, 92

Conread position: 30-456
Cow position: chr6:25215277-25215704 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 121

Conread position: 30-456
Cow position: chr6:46603173-46602756 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 121

Conread position: 30-456
Cow position: chr6:47042140-47041721 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 43

Conread position: 30-456
Cow position: chr6:51715605-51716019 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 37

Conread position: 36-367
Cow position: chr6:10250528-10250206 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 131

Conread position: 41-360
Cow position: chr6:59617199-59617501 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 26, 42

Conread position: 47-456
Cow position: chr6:43792482-43792082 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 119

Conread position: 52-377
Cow position: chr6:65897875-65897564 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 98, 0

Conread position: 53-371
Cow position: chr6:46573873-46574183 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 98

Conread position: 62-456
Cow position: chr6:10679535-10679903 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 77, 31

Conread position: 63-456
Cow position: chr6:52694128-52694513 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 71

Conread position: 97-344
Cow position: chr6:87783-88016 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 191, 35

Conread position: 102-456
Cow position: chr6:47048038-47047694 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 193, 40

Conread position: 104-386
Cow position: chr6:34196525-34196797 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 205
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 53, 46

Conread position: 137-456
Cow position: chr6:13848246-13848556 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 200
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 138-456
Cow position: chr6:28703532-28703223 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 157, 12

Conread position: 138-456
Cow position: chr6:28766861-28766553 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 41, 12

Conread position: 144-387
Cow position: chr6:64790513-64790750 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 49

Conread position: 186-456
Cow position: chr6:11871438-11871168 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 108, 16

Conread position: 191-456
Cow position: chr6:476764-477025 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 89, 11

Conread position: 204-394
Cow position: chr6:30677052-30676868 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 72, 0

Conread position: 205-456
Cow position: chr6:3150469-3150721 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 18, 49

Conread position: 205-456
Cow position: chr6:12626942-12627189 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 40

Conread position: 212-448
Cow position: chr6:20648843-20648616 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 48

Conread position: 213-456
Cow position: chr6:1404074-1403830 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 192

Conread position: 213-456
Cow position: chr6:1410140-1409896 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 166
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 192

Conread position: 256-437
Cow position: chr6:16995685-16995866 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 39, 47

Conread position: 272-456
Cow position: chr6:5749226-5749411 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 27, 133

Show alignments to all cow chromosomes.