Cow genome map

Conread name: Liv1-LVRM10127A01

Conread position: 1-304
Cow position: chr9:28655327-28655613 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 1-371
Cow position: chr9:10322777-10323136 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-383
Cow position: chr9:44819122-44819486 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 1-387
Cow position: chr9:8165906-8165529 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 264
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 284, 25

Conread position: 1-387
Cow position: chr9:50698277-50698649 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 40

Conread position: 1-395
Cow position: chr9:16176743-16177109 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 285
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 33

Conread position: 1-398
Cow position: chr9:4282941-4283342 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 40

Conread position: 1-423
Cow position: chr9:25188073-25188480 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 132

Conread position: 1-444
Cow position: chr9:3167901-3168312 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 302
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 35, 104

Conread position: 1-450
Cow position: chr9:24980950-24980528 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 305
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 75, 40

Conread position: 1-451
Cow position: chr9:1981248-1981671 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 33

Conread position: 1-451
Cow position: chr9:59537072-59537511 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 33

Conread position: 1-452
Cow position: chr9:5141688-5142109 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 33

Conread position: 1-452
Cow position: chr9:6250273-6250713 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-455
Cow position: chr9:3727576-3727998 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 41

Conread position: 1-456
Cow position: chr9:2212113-2212556 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 307
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 65, 14

Conread position: 1-456
Cow position: chr9:2871303-2871749 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 148, 40

Conread position: 1-456
Cow position: chr9:3005262-3004828 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 42

Conread position: 1-456
Cow position: chr9:4533463-4533910 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 154

Conread position: 1-456
Cow position: chr9:17063408-17062968 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 40

Conread position: 1-456
Cow position: chr9:18508848-18508410 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr9:19158565-19158117 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr9:20939296-20939727 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 25

Conread position: 1-456
Cow position: chr9:21410271-21410723 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr9:22654550-22654995 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 49

Conread position: 1-456
Cow position: chr9:27783161-27783601 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 45

Conread position: 1-456
Cow position: chr9:31808551-31808991 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr9:32969922-32970359 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 42

Conread position: 1-456
Cow position: chr9:51181203-51180763 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 44

Conread position: 1-456
Cow position: chr9:59481822-59481381 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 41

Conread position: 2-324
Cow position: chr9:29329612-29329917 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 65, 10

Conread position: 2-455
Cow position: chr9:651052-650613 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 24

Conread position: 2-462
Cow position: chr9:54925529-54925961 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 39

Conread position: 3-398
Cow position: chr9:6977307-6977687 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 270
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 41, 13

Conread position: 4-431
Cow position: chr9:35315902-35315499 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 293
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 77, 36

Conread position: 4-452
Cow position: chr9:4649621-4649195 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 37

Conread position: 6-397
Cow position: chr9:2497998-2497610 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 270
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 35

Conread position: 6-432
Cow position: chr9:1995411-1994994 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 37

Conread position: 6-456
Cow position: chr9:7158968-7158524 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 37

Conread position: 6-456
Cow position: chr9:10937574-10938009 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 44

Conread position: 6-456
Cow position: chr9:28022785-28023216 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 39

Conread position: 7-456
Cow position: chr9:4942827-4942392 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 27

Conread position: 7-456
Cow position: chr9:17304996-17304559 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 36

Conread position: 7-456
Cow position: chr9:29027231-29026791 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 7-456
Cow position: chr9:37161833-37161398 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 38

Conread position: 7-458
Cow position: chr9:828127-827691 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 21

Conread position: 8-342
Cow position: chr9:8284091-8283769 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 229
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 115

Conread position: 8-437
Cow position: chr9:46859481-46859062 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr9:30827718-30828157 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 8-456
Cow position: chr9:50791694-50792129 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 8-456
Cow position: chr9:51211662-51212099 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 10-456
Cow position: chr9:47042942-47043376 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 12-456
Cow position: chr9:5004957-5005401 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 40

Conread position: 12-456
Cow position: chr9:42310664-42311094 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 10

Conread position: 14-455
Cow position: chr9:7003715-7004146 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 254
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 70, 31

Conread position: 16-452
Cow position: chr9:30673360-30673791 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 138

Conread position: 17-437
Cow position: chr9:1251010-1250600 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr9:779831-779403 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 309
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 50, 24

Conread position: 17-456
Cow position: chr9:3309617-3310030 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 24

Conread position: 17-456
Cow position: chr9:44384250-44384679 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 24

Conread position: 18-452
Cow position: chr9:31065709-31066130 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 23

Conread position: 21-456
Cow position: chr9:59447513-59447924 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 257
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 268, 31

Conread position: 28-389
Cow position: chr9:59428010-59428356 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 36, 90

Conread position: 28-456
Cow position: chr9:47003184-47003593 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 125

Conread position: 30-373
Cow position: chr9:3543852-3544216 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 251
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 37, 138

Conread position: 52-371
Cow position: chr9:21110561-21110870 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 238, 41

Conread position: 54-456
Cow position: chr9:38677170-38677560 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 97

Conread position: 67-387
Cow position: chr9:4836301-4835992 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 83

Conread position: 76-456
Cow position: chr9:25034515-25034145 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 56

Conread position: 88-395
Cow position: chr9:17901502-17901209 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 13

Conread position: 92-500
Cow position: chr9:20176651-20176249 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 100

Conread position: 96-403
Cow position: chr9:8402439-8402731 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 102, 44

Conread position: 97-456
Cow position: chr9:35595009-35594667 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 249
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 116-437
Cow position: chr9:30191294-30190991 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 22, 16

Conread position: 118-456
Cow position: chr9:2679360-2679683 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 234
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 120, 18

Conread position: 138-456
Cow position: chr9:27036017-27036318 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 145-432
Cow position: chr9:34724628-34724899 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 261, 47

Conread position: 146-456
Cow position: chr9:7105312-7105012 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 33, 38

Conread position: 161-451
Cow position: chr9:3224513-3224229 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 9

Conread position: 200-456
Cow position: chr9:12912939-12913194 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 89, 24

Conread position: 203-453
Cow position: chr9:42185955-42185716 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 5, 156

Conread position: 205-456
Cow position: chr9:45874688-45874933 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 12

Conread position: 205-456
Cow position: chr9:50094076-50093821 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 190
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 20, 203

Conread position: 209-452
Cow position: chr9:26567772-26568015 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 60

Conread position: 211-456
Cow position: chr9:9562873-9562634 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 118

Conread position: 214-456
Cow position: chr9:1638033-1638270 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 132

Conread position: 241-456
Cow position: chr9:8781708-8781493 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 54, 20

Conread position: 270-456
Cow position: chr9:64015441-64015254 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 135

Conread position: 290-456
Cow position: chr9:26737165-26737326 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 9

Show alignments to all cow chromosomes.