Cow genome map
| Conread name: | Liv1-LVRM10158G02 |
| Conread position: | 228-495 |
| Cow position: | chr3:11713459-11713191 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 241-594 |
| Cow position: | chr3:29708136-29708472 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 37 |
| Conread position: | 245-587 |
| Cow position: | chr3:8008955-8008616 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 16 |
| Conread position: | 246-643 |
| Cow position: | chr3:5452517-5452134 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 15, 209 |
| Conread position: | 249-495 |
| Cow position: | chr3:3250645-3250398 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 178, 173 |
| Conread position: | 251-495 |
| Cow position: | chr3:27866337-27866092 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 253-495 |
| Cow position: | chr3:52683559-52683317 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-590 |
| Cow position: | chr3:7530725-7530405 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 256-420 |
| Cow position: | chr3:10228984-10229148 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-467 |
| Cow position: | chr3:30766365-30766574 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 256-495 |
| Cow position: | chr3:45835328-45835089 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-504 |
| Cow position: | chr3:45840555-45840308 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 129 |
| Conread position: | 257-414 |
| Cow position: | chr3:19201184-19201345 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 257-594 |
| Cow position: | chr3:10132122-10131804 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 27 |
| Conread position: | 258-494 |
| Cow position: | chr3:25718693-25718460 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 259-440 |
| Cow position: | chr3:78209508-78209689 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-470 |
| Cow position: | chr3:24769390-24769182 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 259-495 |
| Cow position: | chr3:8810286-8810053 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 259-495 |
| Cow position: | chr3:26611917-26611685 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 259-495 |
| Cow position: | chr3:51795883-51796121 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 259-495 |
| Cow position: | chr3:78502033-78501797 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-590 |
| Cow position: | chr3:6047120-6046804 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 34, 241 |
| Conread position: | 259-590 |
| Cow position: | chr3:42333100-42333404 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 259-624 |
| Cow position: | chr3:1466298-1465949 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 42 |
| Conread position: | 259-632 |
| Cow position: | chr3:5451564-5451209 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 341, 98 |
| Conread position: | 259-635 |
| Cow position: | chr3:7866251-7865889 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 259-635 |
| Cow position: | chr3:55263950-55263588 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 259-635 |
| Cow position: | chr3:64509646-64509284 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 341, 238 |
| Conread position: | 260-493 |
| Cow position: | chr3:11243956-11243723 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-495 |
| Cow position: | chr3:24812526-24812289 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 260-588 |
| Cow position: | chr3:62737581-62737271 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 260-639 |
| Cow position: | chr3:13613388-13613761 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 262-495 |
| Cow position: | chr3:78788756-78788989 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-495 |
| Cow position: | chr3:6462560-6462799 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 267-495 |
| Cow position: | chr3:22885279-22885506 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 173, 181 |
| Conread position: | 267-499 |
| Cow position: | chr3:81350288-81350056 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-570 |
| Cow position: | chr3:22665285-22665591 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 268-407 |
| Cow position: | chr3:2470333-2470197 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 268-479 |
| Cow position: | chr3:13009279-13009488 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 268-491 |
| Cow position: | chr3:57722880-57722664 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 268-494 |
| Cow position: | chr3:28466471-28466698 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:2469860-2470087 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:7864090-7864317 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:19115444-19115667 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:19206628-19206407 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 268-495 |
| Cow position: | chr3:30994065-30993841 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:34170741-34170523 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:35249038-35249267 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 52 |
| Conread position: | 268-495 |
| Cow position: | chr3:53803104-53802885 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:64111668-64111444 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:69037228-69037001 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:76509547-76509774 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-495 |
| Cow position: | chr3:80440804-80441031 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-499 |
| Cow position: | chr3:32682536-32682764 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 268-499 |
| Cow position: | chr3:51094447-51094672 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 268-502 |
| Cow position: | chr3:26607259-26607494 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 268-502 |
| Cow position: | chr3:60091251-60091016 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 268-502 |
| Cow position: | chr3:84917751-84917522 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 268-541 |
| Cow position: | chr3:61963824-61963559 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 125 |
| Conread position: | 268-590 |
| Cow position: | chr3:7020397-7020700 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 268-590 |
| Cow position: | chr3:71012541-71012238 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 268-593 |
| Cow position: | chr3:25086452-25086151 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 268-624 |
| Cow position: | chr3:52711136-52711476 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 214 |
| Conread position: | 268-628 |
| Cow position: | chr3:38529542-38529888 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 229 |
| Conread position: | 268-635 |
| Cow position: | chr3:14728805-14729156 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 173 |
| Conread position: | 268-635 |
| Cow position: | chr3:75163890-75163544 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 330, 101 |
| Conread position: | 268-636 |
| Cow position: | chr3:15057161-15056807 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 269-493 |
| Cow position: | chr3:2409870-2409646 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 269-504 |
| Cow position: | chr3:19474856-19474621 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 269-590 |
| Cow position: | chr3:56969070-56969366 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 269-594 |
| Cow position: | chr3:34562618-34562308 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 265, 92 |
| Conread position: | 269-596 |
| Cow position: | chr3:45935333-45935642 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 166, 113 |
| Conread position: | 271-483 |
| Cow position: | chr3:23831002-23830796 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 272-495 |
| Cow position: | chr3:7829533-7829321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 276-490 |
| Cow position: | chr3:62423879-62423679 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 281-495 |
| Cow position: | chr3:38280424-38280638 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 283-494 |
| Cow position: | chr3:83331252-83331462 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 284-635 |
| Cow position: | chr3:2445803-2446141 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 312, 213 |
| Conread position: | 296-502 |
| Cow position: | chr3:81827502-81827707 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 94, 108 |
| Conread position: | 301-588 |
| Cow position: | chr3:60064474-60064752 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 204, 47 |
| Conread position: | 341-488 |
| Cow position: | chr3:74477172-74477025 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 354-636 |
| Cow position: | chr3:2481884-2482153 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 144 |
| Conread position: | 361-594 |
| Cow position: | chr3:49874158-49873924 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 26 |
Show alignments to all cow chromosomes.