Cow genome map
| Conread name: | Liv1-LVRM10158G02 |
| Conread position: | 214-590 |
| Cow position: | chr5:63141981-63141638 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 13 |
| Conread position: | 227-495 |
| Cow position: | chr5:15705341-15705607 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 242-590 |
| Cow position: | chr5:71134013-71133682 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 252-588 |
| Cow position: | chr5:19563268-19563585 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 252-594 |
| Cow position: | chr5:44903534-44903211 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 253-590 |
| Cow position: | chr5:61893689-61894012 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 128, 248 |
| Conread position: | 254-428 |
| Cow position: | chr5:27382798-27382971 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 256-411 |
| Cow position: | chr5:47994085-47993930 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-495 |
| Cow position: | chr5:8769185-8769424 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-499 |
| Cow position: | chr5:21509329-21509569 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 257-495 |
| Cow position: | chr5:49869319-49869082 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 259-433 |
| Cow position: | chr5:13540444-13540618 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-437 |
| Cow position: | chr5:35979203-35979025 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-495 |
| Cow position: | chr5:53177613-53177849 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-590 |
| Cow position: | chr5:22847759-22848073 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 88, 166 |
| Conread position: | 259-590 |
| Cow position: | chr5:54668353-54668677 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 143, 249 |
| Conread position: | 260-495 |
| Cow position: | chr5:27385278-27385045 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 79 |
| Conread position: | 260-495 |
| Cow position: | chr5:53941648-53941883 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-635 |
| Cow position: | chr5:70712786-70713149 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 266-588 |
| Cow position: | chr5:14896798-14897110 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 79, 120 |
| Conread position: | 268-414 |
| Cow position: | chr5:31096100-31096246 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-443 |
| Cow position: | chr5:50869287-50869113 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 268-490 |
| Cow position: | chr5:5943878-5944091 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 268-494 |
| Cow position: | chr5:26827691-26827916 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 268-494 |
| Cow position: | chr5:35332472-35332249 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 268-494 |
| Cow position: | chr5:74169402-74169628 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 268-495 |
| Cow position: | chr5:667043-667267 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:3039333-3039106 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:8762623-8762853 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:9967782-9967556 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:18779637-18779413 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 268-495 |
| Cow position: | chr5:60097159-60096926 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:60151301-60151075 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 268-495 |
| Cow position: | chr5:66391181-66390954 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-502 |
| Cow position: | chr5:64799435-64799668 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 268-590 |
| Cow position: | chr5:33334148-33334452 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 268-594 |
| Cow position: | chr5:50824102-50823785 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 228, 89 |
| Conread position: | 268-616 |
| Cow position: | chr5:47865428-47865101 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 268-635 |
| Cow position: | chr5:30234388-30234036 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 328, 98 |
| Conread position: | 268-635 |
| Cow position: | chr5:68411441-68411098 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 269, 76 |
| Conread position: | 269-594 |
| Cow position: | chr5:35483061-35482736 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 250 |
| Conread position: | 269-596 |
| Cow position: | chr5:37023838-37024141 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 270-502 |
| Cow position: | chr5:27889235-27889468 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 272-428 |
| Cow position: | chr5:47998094-47997938 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-590 |
| Cow position: | chr5:59558389-59558102 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 286-495 |
| Cow position: | chr5:67945639-67945847 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 298-495 |
| Cow position: | chr5:9539828-9540023 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 304-591 |
| Cow position: | chr5:13565573-13565866 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 312-643 |
| Cow position: | chr5:18892741-18893056 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 292, 72 |
| Conread position: | 345-589 |
| Cow position: | chr5:17873081-17873307 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 147, 0 |
Show alignments to all cow chromosomes.