Cow genome map
| Conread name: | Liv1-LVRM10158G02 |
| Conread position: | 219-590 |
| Cow position: | chr6:44459874-44460228 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 245-495 |
| Cow position: | chr6:2597817-2597573 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 245-594 |
| Cow position: | chr6:32521832-32522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 248-409 |
| Cow position: | chr6:4816941-4817103 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 249-594 |
| Cow position: | chr6:22875338-22875661 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 254-495 |
| Cow position: | chr6:7870693-7870934 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 255-495 |
| Cow position: | chr6:2982587-2982346 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 256-495 |
| Cow position: | chr6:104183-104422 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 256-495 |
| Cow position: | chr6:23904336-23904575 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 258-495 |
| Cow position: | chr6:20532914-20532688 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 258-495 |
| Cow position: | chr6:26939887-26939649 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 181, 90 |
| Conread position: | 259-483 |
| Cow position: | chr6:5075010-5074786 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 55, 33 |
| Conread position: | 259-494 |
| Cow position: | chr6:44691756-44691521 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 43, 37 |
| Conread position: | 259-495 |
| Cow position: | chr6:23898163-23898399 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-495 |
| Cow position: | chr6:48724608-48724372 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-495 |
| Cow position: | chr6:50350282-50350519 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 259-495 |
| Cow position: | chr6:60865844-60866080 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-635 |
| Cow position: | chr6:57793702-57794064 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 339, 225 |
| Conread position: | 260-488 |
| Cow position: | chr6:54538596-54538823 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 260-495 |
| Cow position: | chr6:36675191-36674956 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-495 |
| Cow position: | chr6:36923103-36923338 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 260-495 |
| Cow position: | chr6:52961887-52962116 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 260-594 |
| Cow position: | chr6:39448760-39449067 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 260-594 |
| Cow position: | chr6:61409111-61409427 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 260-624 |
| Cow position: | chr6:55844149-55843815 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 329, 84 |
| Conread position: | 260-631 |
| Cow position: | chr6:36924374-36924016 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 237 |
| Conread position: | 267-512 |
| Cow position: | chr6:67428916-67428673 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 228, 99 |
| Conread position: | 267-594 |
| Cow position: | chr6:26246054-26245730 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 268-455 |
| Cow position: | chr6:15236362-15236538 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 268-493 |
| Cow position: | chr6:23212975-23212752 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 268-495 |
| Cow position: | chr6:2981607-2981829 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 268-495 |
| Cow position: | chr6:42768534-42768749 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 268-495 |
| Cow position: | chr6:65680284-65680058 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 268-590 |
| Cow position: | chr6:59689437-59689133 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 268-592 |
| Cow position: | chr6:61434728-61435033 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 268-596 |
| Cow position: | chr6:49756886-49756577 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 268-643 |
| Cow position: | chr6:52418910-52418549 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 321, 229 |
| Conread position: | 268-643 |
| Cow position: | chr6:66256278-66255909 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 61 |
| Conread position: | 269-502 |
| Cow position: | chr6:19041880-19042114 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 269-590 |
| Cow position: | chr6:3661407-3661104 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 269-590 |
| Cow position: | chr6:7527868-7528178 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 76 |
| Conread position: | 269-593 |
| Cow position: | chr6:4149961-4149633 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 269-639 |
| Cow position: | chr6:15034868-15035236 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 270-495 |
| Cow position: | chr6:48025336-48025561 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 270-495 |
| Cow position: | chr6:53430611-53430835 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 272-495 |
| Cow position: | chr6:19261224-19261452 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 288-495 |
| Cow position: | chr6:46533364-46533158 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 298-495 |
| Cow position: | chr6:2159311-2159114 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 300-590 |
| Cow position: | chr6:55522513-55522241 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 314-592 |
| Cow position: | chr6:16554866-16554606 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 327-594 |
| Cow position: | chr6:49411751-49412001 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 171 |
Show alignments to all cow chromosomes.