Cow genome map
| Conread name: | Liv1-LVRM10162A01 |
| Conread position: | 4-351 |
| Cow position: | chr11:71982107-71981739 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 242 |
| Conread position: | 6-530 |
| Cow position: | chr11:17546586-17547104 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 7-209 |
| Cow position: | chr11:42432566-42432768 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 7-530 |
| Cow position: | chr11:4269967-4269460 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 7-534 |
| Cow position: | chr11:26070624-26070104 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 31-266 |
| Cow position: | chr11:82123701-82123468 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 31-316 |
| Cow position: | chr11:45654559-45654281 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 153, 6 |
| Conread position: | 31-352 |
| Cow position: | chr11:9216620-9216305 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 6 |
| Conread position: | 33-293 |
| Cow position: | chr11:23877753-23878010 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 33-299 |
| Cow position: | chr11:10091136-10091400 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 33-303 |
| Cow position: | chr11:31874321-31874062 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 33-423 |
| Cow position: | chr11:12094025-12094399 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 163 |
| Conread position: | 33-530 |
| Cow position: | chr11:41170238-41169752 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 33-530 |
| Cow position: | chr11:53431601-53431107 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 33-534 |
| Cow position: | chr11:30123388-30122897 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 5 |
| Conread position: | 33-534 |
| Cow position: | chr11:54484956-54484468 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 34-165 |
| Cow position: | chr11:22935533-22935663 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 34-214 |
| Cow position: | chr11:39803663-39803844 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 131, 91 |
| Conread position: | 34-240 |
| Cow position: | chr11:4027102-4026896 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 34-530 |
| Cow position: | chr11:28108595-28109079 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 229 |
| Conread position: | 34-532 |
| Cow position: | chr11:9156697-9156204 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 28 |
| Conread position: | 34-534 |
| Cow position: | chr11:3855690-3856165 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 34-534 |
| Cow position: | chr11:26564621-26564147 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 66 |
| Conread position: | 34-534 |
| Cow position: | chr11:47759825-47759332 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 229 |
| Conread position: | 35-233 |
| Cow position: | chr11:76373758-76373562 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 180, 98 |
| Conread position: | 35-536 |
| Cow position: | chr11:29232550-29232067 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 158 |
| Conread position: | 36-196 |
| Cow position: | chr11:32480717-32480557 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-305 |
| Cow position: | chr11:20510856-20511122 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 36-317 |
| Cow position: | chr11:36743719-36743438 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 229 |
| Conread position: | 36-325 |
| Cow position: | chr11:73477769-73478056 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 36-355 |
| Cow position: | chr11:1495628-1495307 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 227 |
| Conread position: | 36-355 |
| Cow position: | chr11:5342461-5342139 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 229 |
| Conread position: | 36-355 |
| Cow position: | chr11:15984086-15984415 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 236 |
| Conread position: | 36-355 |
| Cow position: | chr11:33194098-33193778 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 228 |
| Conread position: | 36-355 |
| Cow position: | chr11:64081622-64081302 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 227 |
| Conread position: | 36-523 |
| Cow position: | chr11:31926632-31927099 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 75 |
| Conread position: | 36-529 |
| Cow position: | chr11:58134854-58135337 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:10847911-10848392 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:11988572-11989074 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:12357956-12357472 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:17107225-17106741 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 223 |
| Conread position: | 36-530 |
| Cow position: | chr11:19102035-19101545 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:20733781-20733297 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 227 |
| Conread position: | 36-530 |
| Cow position: | chr11:24393780-24394255 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 36-530 |
| Cow position: | chr11:26124466-26123988 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:29668148-29667664 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 84 |
| Conread position: | 36-530 |
| Cow position: | chr11:30252658-30253174 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 228 |
| Conread position: | 36-530 |
| Cow position: | chr11:38834974-38834490 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 18 |
| Conread position: | 36-530 |
| Cow position: | chr11:44156787-44156308 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr11:44518404-44517923 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 26 |
| Conread position: | 36-530 |
| Cow position: | chr11:53286704-53286226 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 199 |
| Conread position: | 36-530 |
| Cow position: | chr11:67450955-67451435 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 137 |
| Conread position: | 36-530 |
| Cow position: | chr11:71330053-71330537 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-532 |
| Cow position: | chr11:3493455-3493934 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 204 |
| Conread position: | 36-532 |
| Cow position: | chr11:9734212-9733732 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 71 |
| Conread position: | 36-534 |
| Cow position: | chr11:26547971-26548471 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-534 |
| Cow position: | chr11:40775540-40775054 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 65 |
| Conread position: | 36-534 |
| Cow position: | chr11:52419851-52420349 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 225 |
| Conread position: | 36-535 |
| Cow position: | chr11:44252260-44252744 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-535 |
| Cow position: | chr11:49553700-49553228 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 132 |
| Conread position: | 36-535 |
| Cow position: | chr11:49559207-49558731 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 18 |
| Conread position: | 37-269 |
| Cow position: | chr11:52657613-52657385 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 37-530 |
| Cow position: | chr11:43514171-43513693 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 37-534 |
| Cow position: | chr11:24336728-24336259 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 56 |
| Conread position: | 40-519 |
| Cow position: | chr11:28054144-28053684 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 40-531 |
| Cow position: | chr11:85393341-85392883 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 22 |
| Conread position: | 43-530 |
| Cow position: | chr11:19063605-19063131 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 220 |
| Conread position: | 43-530 |
| Cow position: | chr11:32452293-32452769 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 221 |
| Conread position: | 43-530 |
| Cow position: | chr11:37476533-37476040 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 220 |
| Conread position: | 43-530 |
| Cow position: | chr11:57627591-57627111 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 220 |
| Conread position: | 43-534 |
| Cow position: | chr11:36763218-36763690 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 53 |
| Conread position: | 45-345 |
| Cow position: | chr11:80473798-80473496 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 45-526 |
| Cow position: | chr11:9601863-9601379 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 197 |
| Conread position: | 46-532 |
| Cow position: | chr11:1489671-1489210 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 44 |
| Conread position: | 46-533 |
| Cow position: | chr11:4063389-4062931 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 50 |
| Conread position: | 48-530 |
| Cow position: | chr11:28229283-28228824 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 141 |
| Conread position: | 48-532 |
| Cow position: | chr11:63654864-63654389 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 114 |
| Conread position: | 57-351 |
| Cow position: | chr11:27669851-27669561 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 267, 137 |
| Conread position: | 66-531 |
| Cow position: | chr11:44582845-44582396 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 85-529 |
| Cow position: | chr11:77254218-77253764 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 156 |
| Conread position: | 89-501 |
| Cow position: | chr11:7110591-7110195 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 97-205 |
| Cow position: | chr11:62229993-62230101 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 157-530 |
| Cow position: | chr11:72310453-72310092 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 112 |
| Conread position: | 377-534 |
| Cow position: | chr11:44490824-44490673 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 383-534 |
| Cow position: | chr11:33977662-33977510 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 8, 26 |
Show alignments to all cow chromosomes.