Cow genome map

Conread name: Liv1-LVRM10162A01

Conread position: 4-534
Cow position: chr16:49256200-49255682 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 232

Conread position: 31-316
Cow position: chr16:45798622-45798900 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 6, 0

Conread position: 31-324
Cow position: chr16:25258004-25258302 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 6

Conread position: 31-530
Cow position: chr16:42736335-42735849 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 6

Conread position: 33-458
Cow position: chr16:51405876-51405484 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 33

Conread position: 33-530
Cow position: chr16:14665753-14665266 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 88

Conread position: 33-530
Cow position: chr16:25188707-25189191 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 230

Conread position: 33-534
Cow position: chr16:23670757-23671244 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 18

Conread position: 34-199
Cow position: chr16:49234600-49234435 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 135
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 34-203
Cow position: chr16:23808498-23808662 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 127, 0

Conread position: 34-250
Cow position: chr16:47473559-47473776 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 30, 0

Conread position: 34-309
Cow position: chr16:39367321-39367044 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 232

Conread position: 34-505
Cow position: chr16:29034111-29034582 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 117

Conread position: 34-529
Cow position: chr16:37481067-37480598 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 56

Conread position: 34-530
Cow position: chr16:31591859-31591373 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 34-532
Cow position: chr16:18498229-18497756 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 150

Conread position: 34-534
Cow position: chr16:1432247-1432737 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 122

Conread position: 34-534
Cow position: chr16:16271079-16270587 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 59

Conread position: 34-534
Cow position: chr16:25085677-25086164 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 109

Conread position: 34-534
Cow position: chr16:37455951-37455454 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 53

Conread position: 34-534
Cow position: chr16:42185427-42184947 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 80

Conread position: 34-538
Cow position: chr16:51084200-51084703 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 33

Conread position: 35-265
Cow position: chr16:30049546-30049776 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 213

Conread position: 36-163
Cow position: chr16:15567097-15567224 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 83

Conread position: 36-200
Cow position: chr16:7463733-7463897 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 83

Conread position: 36-205
Cow position: chr16:10203379-10203221 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 56

Conread position: 36-243
Cow position: chr16:49221862-49221663 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 54, 0

Conread position: 36-282
Cow position: chr16:4302277-4302033 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 201, 23

Conread position: 36-288
Cow position: chr16:41166708-41166458 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-305
Cow position: chr16:28197615-28197346 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 229

Conread position: 36-314
Cow position: chr16:28377280-28377556 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 36-325
Cow position: chr16:46707304-46707017 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-335
Cow position: chr16:4305200-4304906 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 36-342
Cow position: chr16:2727225-2726920 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 51

Conread position: 36-345
Cow position: chr16:27733729-27733427 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 83

Conread position: 36-351
Cow position: chr16:34530375-34530701 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 230

Conread position: 36-367
Cow position: chr16:25457401-25457067 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-511
Cow position: chr16:28471039-28470579 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:406971-406497 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 20

Conread position: 36-530
Cow position: chr16:1567390-1566912 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:2410904-2410425 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:2483077-2482596 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:4478920-4478427 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 36-530
Cow position: chr16:7676392-7675915 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:15185134-15185617 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:21185677-21186158 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 66

Conread position: 36-530
Cow position: chr16:23252372-23251894 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 83

Conread position: 36-530
Cow position: chr16:23535827-23535347 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 26

Conread position: 36-530
Cow position: chr16:25441689-25442170 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:26663812-26664295 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 98

Conread position: 36-530
Cow position: chr16:40296114-40295630 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr16:43897213-43896731 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-532
Cow position: chr16:28170309-28169807 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 234

Conread position: 36-534
Cow position: chr16:8816042-8815557 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 12

Conread position: 36-534
Cow position: chr16:29047085-29047569 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 37-530
Cow position: chr16:15493566-15494047 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 37-534
Cow position: chr16:15476905-15477390 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 39

Conread position: 40-315
Cow position: chr16:20201983-20202256 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 44

Conread position: 40-354
Cow position: chr16:12537858-12537546 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 43-313
Cow position: chr16:11283379-11283648 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 221

Conread position: 43-342
Cow position: chr16:5661913-5662213 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 133

Conread position: 48-530
Cow position: chr16:5484805-5485274 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 71

Conread position: 49-354
Cow position: chr16:25342044-25342350 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 70

Conread position: 59-530
Cow position: chr16:1860307-1860754 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 201

Conread position: 62-208
Cow position: chr16:32795-32939 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 121-534
Cow position: chr16:337314-337713 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 147

Conread position: 136-534
Cow position: chr16:26978300-26978675 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 124

Conread position: 143-530
Cow position: chr16:26105892-26105517 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 25

Conread position: 165-530
Cow position: chr16:15567445-15567799 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 104

Conread position: 215-533
Cow position: chr16:49234390-49234086 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 54

Conread position: 274-534
Cow position: chr16:16897758-16898004 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 65, 28

Conread position: 375-531
Cow position: chr16:23808724-23808872 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Show alignments to all cow chromosomes.