Cow genome map
| Conread name: | Liv1-LVRM10162A01 |
| Conread position: | 6-413 |
| Cow position: | chr17:8209700-8210125 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 272 |
| Conread position: | 6-479 |
| Cow position: | chr17:1787332-1786876 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 32 |
| Conread position: | 6-530 |
| Cow position: | chr17:43989093-43989616 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 273 |
| Conread position: | 6-532 |
| Cow position: | chr17:24782752-24783280 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 166 |
| Conread position: | 7-353 |
| Cow position: | chr17:42265561-42265912 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 81 |
| Conread position: | 13-530 |
| Cow position: | chr17:4060711-4061212 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 47 |
| Conread position: | 31-180 |
| Cow position: | chr17:22132860-22133004 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 31-354 |
| Cow position: | chr17:20087120-20086801 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 6 |
| Conread position: | 31-481 |
| Cow position: | chr17:6076840-6077254 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 31-532 |
| Cow position: | chr17:2262733-2263226 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 233 |
| Conread position: | 31-534 |
| Cow position: | chr17:20081236-20080752 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 6 |
| Conread position: | 33-305 |
| Cow position: | chr17:2169113-2169372 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 33-323 |
| Cow position: | chr17:11025881-11025597 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 29 |
| Conread position: | 33-501 |
| Cow position: | chr17:20488572-20489027 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 83 |
| Conread position: | 33-530 |
| Cow position: | chr17:6069185-6069665 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 33-530 |
| Cow position: | chr17:15851323-15851803 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 34-261 |
| Cow position: | chr17:14307218-14306995 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 34-528 |
| Cow position: | chr17:5227253-5227737 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 28 |
| Conread position: | 34-529 |
| Cow position: | chr17:6000809-6000365 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 34-530 |
| Cow position: | chr17:1880730-1881216 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 173 |
| Conread position: | 34-532 |
| Cow position: | chr17:34156750-34157238 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 115 |
| Conread position: | 34-534 |
| Cow position: | chr17:4082676-4083141 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 69 |
| Conread position: | 34-534 |
| Cow position: | chr17:18194444-18194925 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 82 |
| Conread position: | 34-534 |
| Cow position: | chr17:20403056-20403548 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 80 |
| Conread position: | 34-534 |
| Cow position: | chr17:22558618-22559088 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 35-158 |
| Cow position: | chr17:28019021-28019145 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 35-356 |
| Cow position: | chr17:38874262-38874586 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 52 |
| Conread position: | 35-529 |
| Cow position: | chr17:4942096-4941604 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 58 |
| Conread position: | 36-250 |
| Cow position: | chr17:18103053-18102842 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-293 |
| Cow position: | chr17:20722253-20722507 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 36-354 |
| Cow position: | chr17:3642198-3641881 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-354 |
| Cow position: | chr17:15436426-15436745 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 227 |
| Conread position: | 36-371 |
| Cow position: | chr17:2247435-2247102 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 202 |
| Conread position: | 36-529 |
| Cow position: | chr17:2580256-2580738 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-529 |
| Cow position: | chr17:6260491-6260974 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr17:3655660-3655179 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 150 |
| Conread position: | 36-530 |
| Cow position: | chr17:11087088-11086612 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr17:14216399-14215913 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 111 |
| Conread position: | 36-530 |
| Cow position: | chr17:15142724-15142241 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 36-530 |
| Cow position: | chr17:16856884-16856404 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr17:24029370-24028887 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 83 |
| Conread position: | 36-532 |
| Cow position: | chr17:20099843-20099351 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 36-532 |
| Cow position: | chr17:23323819-23323334 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 489, 227 |
| Conread position: | 36-533 |
| Cow position: | chr17:15324463-15324947 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 37-530 |
| Cow position: | chr17:40805443-40805922 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 83 |
| Conread position: | 38-339 |
| Cow position: | chr17:15156333-15156034 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 194 |
| Conread position: | 38-521 |
| Cow position: | chr17:2030757-2031231 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 227 |
| Conread position: | 40-529 |
| Cow position: | chr17:19268191-19267713 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 40-530 |
| Cow position: | chr17:14894799-14895287 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 43-310 |
| Cow position: | chr17:14910826-14910566 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 61 |
| Conread position: | 43-530 |
| Cow position: | chr17:11783486-11783968 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 19 |
| Conread position: | 43-530 |
| Cow position: | chr17:31767400-31766923 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 220 |
| Conread position: | 47-534 |
| Cow position: | chr17:54808-54326 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 9 |
| Conread position: | 48-320 |
| Cow position: | chr17:227666-227397 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 49-530 |
| Cow position: | chr17:6120359-6120830 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 220 |
| Conread position: | 50-532 |
| Cow position: | chr17:36548-37009 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 61 |
| Conread position: | 62-530 |
| Cow position: | chr17:9080750-9080307 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 151 |
| Conread position: | 73-530 |
| Cow position: | chr17:14240169-14240614 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 76-530 |
| Cow position: | chr17:151224-150770 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 193 |
| Conread position: | 76-534 |
| Cow position: | chr17:1704018-1703577 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 86 |
| Conread position: | 120-516 |
| Cow position: | chr17:239061-239438 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 153 |
| Conread position: | 201-534 |
| Cow position: | chr17:22132999-22133317 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 266-534 |
| Cow position: | chr17:2078138-2077878 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 44, 92 |
Show alignments to all cow chromosomes.