Cow genome map

Conread name: Liv1-LVRM10162A01

Conread position: 4-531
Cow position: chr2:28640602-28640073 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 166

Conread position: 4-534
Cow position: chr2:47603003-47602491 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 71

Conread position: 4-536
Cow position: chr2:36030107-36029600 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 32

Conread position: 6-361
Cow position: chr2:14777582-14777244 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 254
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 17, 24

Conread position: 6-532
Cow position: chr2:10611389-10610872 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 61

Conread position: 7-163
Cow position: chr2:767225-767064 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 66

Conread position: 7-345
Cow position: chr2:34564372-34564046 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 31, 90

Conread position: 8-534
Cow position: chr2:5870133-5869608 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 31-327
Cow position: chr2:10732487-10732195 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 31-415
Cow position: chr2:41172952-41173324 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 6

Conread position: 31-469
Cow position: chr2:7903325-7903739 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 6

Conread position: 31-506
Cow position: chr2:41150903-41151356 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 7

Conread position: 31-529
Cow position: chr2:64580599-64580122 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 326
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 6

Conread position: 31-530
Cow position: chr2:22078068-22078558 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 6

Conread position: 31-534
Cow position: chr2:1691262-1691743 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 6

Conread position: 31-534
Cow position: chr2:6751428-6750930 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 330
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 318, 6

Conread position: 31-534
Cow position: chr2:15576554-15576065 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 6

Conread position: 33-238
Cow position: chr2:50983011-50982808 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 166
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 81, 29

Conread position: 33-517
Cow position: chr2:50077886-50078344 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 33-529
Cow position: chr2:11158833-11158353 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 34-314
Cow position: chr2:781155-780882 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 34-326
Cow position: chr2:53554251-53554531 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 212
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 122, 0

Conread position: 34-359
Cow position: chr2:45964830-45964504 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 95

Conread position: 34-438
Cow position: chr2:62794633-62795023 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 244
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 305, 85

Conread position: 34-501
Cow position: chr2:43960984-43961437 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 74

Conread position: 34-514
Cow position: chr2:13482380-13481914 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 242

Conread position: 34-529
Cow position: chr2:36052722-36052244 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 95

Conread position: 34-530
Cow position: chr2:5904032-5903551 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 236

Conread position: 34-530
Cow position: chr2:19011632-19012124 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 34-530
Cow position: chr2:24147154-24147632 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 22

Conread position: 34-532
Cow position: chr2:14823389-14823858 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 83

Conread position: 34-534
Cow position: chr2:32655956-32656420 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 34-534
Cow position: chr2:34051454-34051931 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 224

Conread position: 34-534
Cow position: chr2:42332580-42332117 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 47

Conread position: 34-534
Cow position: chr2:44991009-44990520 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 10

Conread position: 34-534
Cow position: chr2:55483841-55483377 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 35-203
Cow position: chr2:50323476-50323643 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 117

Conread position: 36-236
Cow position: chr2:5813104-5812914 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 179, 40

Conread position: 36-251
Cow position: chr2:74510772-74510547 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 0

Conread position: 36-252
Cow position: chr2:25888303-25888090 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 78, 83

Conread position: 36-295
Cow position: chr2:41686797-41687053 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-345
Cow position: chr2:80292663-80292362 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 36-355
Cow position: chr2:364770-364448 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 228

Conread position: 36-355
Cow position: chr2:49472536-49472858 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 229

Conread position: 36-490
Cow position: chr2:52062833-52063295 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 36-498
Cow position: chr2:16290751-16291188 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 36-528
Cow position: chr2:32065792-32065316 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-529
Cow position: chr2:282401-281922 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-529
Cow position: chr2:12224023-12223505 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 36-529
Cow position: chr2:28649309-28648833 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 58

Conread position: 36-530
Cow position: chr2:211971-211488 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 205

Conread position: 36-530
Cow position: chr2:2356152-2355670 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-530
Cow position: chr2:3324271-3323791 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 115

Conread position: 36-530
Cow position: chr2:4402869-4402389 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 223

Conread position: 36-530
Cow position: chr2:6961805-6962287 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 220

Conread position: 36-530
Cow position: chr2:10185936-10185458 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr2:13045415-13044943 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 20

Conread position: 36-530
Cow position: chr2:28793536-28794017 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr2:36980669-36981149 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr2:39421911-39422394 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-530
Cow position: chr2:41657464-41657946 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 227

Conread position: 36-530
Cow position: chr2:42670417-42669935 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 82

Conread position: 36-530
Cow position: chr2:54737770-54738258 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 227

Conread position: 36-530
Cow position: chr2:59413396-59412923 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 227

Conread position: 36-530
Cow position: chr2:81257462-81257938 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-531
Cow position: chr2:9958782-9958296 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 23

Conread position: 36-532
Cow position: chr2:2412508-2412023 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 199

Conread position: 36-532
Cow position: chr2:52616760-52617249 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 227

Conread position: 36-534
Cow position: chr2:53330046-53330539 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 102

Conread position: 36-534
Cow position: chr2:67420661-67420175 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 199

Conread position: 37-307
Cow position: chr2:65938161-65937895 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 48

Conread position: 37-354
Cow position: chr2:16075211-16074903 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 59

Conread position: 37-530
Cow position: chr2:16900542-16901029 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 37-530
Cow position: chr2:24924852-24925335 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 39-534
Cow position: chr2:51617540-51618025 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 224

Conread position: 39-534
Cow position: chr2:78742877-78743355 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 23

Conread position: 40-506
Cow position: chr2:10268365-10267919 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 92

Conread position: 40-530
Cow position: chr2:8118834-8119314 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 40-530
Cow position: chr2:47811138-47811619 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 40-532
Cow position: chr2:44934660-44934208 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 43-530
Cow position: chr2:2087877-2087396 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 119

Conread position: 43-530
Cow position: chr2:9908209-9908684 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 72

Conread position: 43-530
Cow position: chr2:12479773-12479300 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 19

Conread position: 43-530
Cow position: chr2:25028987-25028522 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 192

Conread position: 48-534
Cow position: chr2:49605242-49605714 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 216

Conread position: 56-354
Cow position: chr2:53662019-53662316 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 16

Conread position: 56-524
Cow position: chr2:5484682-5484245 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 63-313
Cow position: chr2:20902028-20901784 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 99

Conread position: 64-355
Cow position: chr2:47038105-47037814 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 176

Conread position: 69-352
Cow position: chr2:38373706-38373987 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 249, 187

Conread position: 87-534
Cow position: chr2:28613993-28613560 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 182

Conread position: 98-529
Cow position: chr2:63291616-63291202 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 56

Conread position: 122-532
Cow position: chr2:49627983-49628379 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 32

Conread position: 141-330
Cow position: chr2:195149-194964 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 173, 27

Conread position: 377-502
Cow position: chr2:63207453-63207329 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 83, 30

Conread position: 377-534
Cow position: chr2:32434700-32434543 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 100, 30

Conread position: 410-534
Cow position: chr2:19225529-19225654 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.