Cow genome map
| Conread name: | Liv1-LVRM10162A01 |
| Conread position: | 6-529 |
| Cow position: | chr21:37372120-37372638 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 265 |
| Conread position: | 7-262 |
| Cow position: | chr21:446004-446262 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 7-534 |
| Cow position: | chr21:9892789-9893298 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 29 |
| Conread position: | 31-217 |
| Cow position: | chr21:47941775-47941960 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 31-279 |
| Cow position: | chr21:27566564-27566800 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 31-534 |
| Cow position: | chr21:18817637-18817143 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 33-355 |
| Cow position: | chr21:12055084-12054767 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 51 |
| Conread position: | 33-476 |
| Cow position: | chr21:25782561-25782985 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 253, 49 |
| Conread position: | 33-530 |
| Cow position: | chr21:10567595-10568104 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 33-530 |
| Cow position: | chr21:26402570-26402087 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 86 |
| Conread position: | 33-532 |
| Cow position: | chr21:1689243-1688750 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 34-262 |
| Cow position: | chr21:217973-218191 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 226, 64 |
| Conread position: | 34-286 |
| Cow position: | chr21:49295526-49295777 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 34-311 |
| Cow position: | chr21:20743663-20743387 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 34-354 |
| Cow position: | chr21:13313682-13313995 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 35 |
| Conread position: | 34-355 |
| Cow position: | chr21:37719100-37718786 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 37 |
| Conread position: | 34-524 |
| Cow position: | chr21:21915609-21916083 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 82 |
| Conread position: | 34-530 |
| Cow position: | chr21:146848-147327 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 34-534 |
| Cow position: | chr21:467797-468261 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 81 |
| Conread position: | 34-534 |
| Cow position: | chr21:4589075-4588572 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 62 |
| Conread position: | 36-194 |
| Cow position: | chr21:27149832-27149990 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-205 |
| Cow position: | chr21:5015384-5015219 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 36-246 |
| Cow position: | chr21:48117023-48117229 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 36-310 |
| Cow position: | chr21:26637282-26637006 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 102, 231 |
| Conread position: | 36-355 |
| Cow position: | chr21:37046543-37046861 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 170 |
| Conread position: | 36-355 |
| Cow position: | chr21:46916596-46916916 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 227 |
| Conread position: | 36-485 |
| Cow position: | chr21:34001753-34001316 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 112 |
| Conread position: | 36-521 |
| Cow position: | chr21:2882817-2882346 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-529 |
| Cow position: | chr21:5018036-5018541 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 25 |
| Conread position: | 36-529 |
| Cow position: | chr21:10851001-10851485 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 36-530 |
| Cow position: | chr21:1192681-1193156 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 36-530 |
| Cow position: | chr21:5840343-5839862 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr21:27070046-27069563 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr21:28256354-28256826 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 223 |
| Conread position: | 36-530 |
| Cow position: | chr21:31515407-31514915 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 78 |
| Conread position: | 36-530 |
| Cow position: | chr21:35144683-35145160 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 36-530 |
| Cow position: | chr21:39425984-39426462 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 79 |
| Conread position: | 36-530 |
| Cow position: | chr21:40270751-40270272 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 37-534 |
| Cow position: | chr21:4184826-4185325 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 226 |
| Conread position: | 38-530 |
| Cow position: | chr21:3779691-3780171 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 38-534 |
| Cow position: | chr21:30004-30477 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 77 |
| Conread position: | 38-534 |
| Cow position: | chr21:360566-361077 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 223 |
| Conread position: | 38-534 |
| Cow position: | chr21:1287295-1286797 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 232 |
| Conread position: | 40-534 |
| Cow position: | chr21:37148958-37149437 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 220 |
| Conread position: | 40-535 |
| Cow position: | chr21:2417140-2417620 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 168 |
| Conread position: | 44-294 |
| Cow position: | chr21:11452728-11452479 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 193, 220 |
| Conread position: | 44-530 |
| Cow position: | chr21:11506526-11507013 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 104 |
| Conread position: | 47-354 |
| Cow position: | chr21:2540141-2539842 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 68 |
| Conread position: | 56-322 |
| Cow position: | chr21:49325401-49325665 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 7, 26 |
| Conread position: | 59-463 |
| Cow position: | chr21:37935768-37936160 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 204 |
| Conread position: | 89-349 |
| Cow position: | chr21:6624746-6625007 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 122 |
| Conread position: | 130-423 |
| Cow position: | chr21:48292464-48292747 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 210, 113 |
| Conread position: | 209-522 |
| Cow position: | chr21:28736266-28736568 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 282-490 |
| Cow position: | chr21:27566910-27567114 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 86 |
Show alignments to all cow chromosomes.