Cow genome map
| Conread name: | Liv1-LVRM10162A01 |
| Conread position: | 4-330 |
| Cow position: | chr29:9643045-9642708 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 268 |
| Conread position: | 30-341 |
| Cow position: | chr29:43408864-43408558 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 288, 13 |
| Conread position: | 31-314 |
| Cow position: | chr29:41366929-41366653 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 6 |
| Conread position: | 33-268 |
| Cow position: | chr29:15894093-15893857 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 109, 196 |
| Conread position: | 33-307 |
| Cow position: | chr29:32804197-32804467 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 13 |
| Conread position: | 33-345 |
| Cow position: | chr29:32286958-32287266 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 129 |
| Conread position: | 33-530 |
| Cow position: | chr29:31182161-31182646 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 231 |
| Conread position: | 33-531 |
| Cow position: | chr29:19885824-19886319 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 207 |
| Conread position: | 34-318 |
| Cow position: | chr29:4633644-4633363 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 34-349 |
| Cow position: | chr29:2949577-2949284 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 281, 44 |
| Conread position: | 34-529 |
| Cow position: | chr29:14085368-14084888 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 78 |
| Conread position: | 34-530 |
| Cow position: | chr29:10823215-10822741 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 34-530 |
| Cow position: | chr29:35815217-35814733 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 229 |
| Conread position: | 34-534 |
| Cow position: | chr29:5981955-5981464 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 74 |
| Conread position: | 35-530 |
| Cow position: | chr29:16111140-16111628 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 21 |
| Conread position: | 35-531 |
| Cow position: | chr29:42803175-42803654 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 24 |
| Conread position: | 36-224 |
| Cow position: | chr29:27249583-27249395 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-251 |
| Cow position: | chr29:2690667-2690887 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 36-258 |
| Cow position: | chr29:14216729-14216948 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-299 |
| Cow position: | chr29:34926238-34926499 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 36-345 |
| Cow position: | chr29:32558994-32558677 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 234 |
| Conread position: | 36-355 |
| Cow position: | chr29:609863-609545 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 36-355 |
| Cow position: | chr29:15968101-15967782 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 227 |
| Conread position: | 36-458 |
| Cow position: | chr29:6265514-6265098 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-473 |
| Cow position: | chr29:2100610-2101035 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 20 |
| Conread position: | 36-474 |
| Cow position: | chr29:40502217-40501797 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-516 |
| Cow position: | chr29:43323320-43323786 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-528 |
| Cow position: | chr29:14586681-14587158 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:47692-47196 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 87 |
| Conread position: | 36-530 |
| Cow position: | chr29:7430458-7429976 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:7845142-7845629 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 232 |
| Conread position: | 36-530 |
| Cow position: | chr29:10647490-10647007 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 36-530 |
| Cow position: | chr29:20251925-20252409 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:23976884-23977366 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 98 |
| Conread position: | 36-530 |
| Cow position: | chr29:25931780-25931288 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:26164066-26163594 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 36-530 |
| Cow position: | chr29:31096621-31096140 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 192 |
| Conread position: | 36-530 |
| Cow position: | chr29:32540855-32541337 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 36-530 |
| Cow position: | chr29:34799044-34798567 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:38227739-38228220 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr29:45460482-45460984 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 100 |
| Conread position: | 36-530 |
| Cow position: | chr29:45586615-45586138 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-532 |
| Cow position: | chr29:5958363-5958835 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 37-252 |
| Cow position: | chr29:16023300-16023508 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 77, 82 |
| Conread position: | 37-530 |
| Cow position: | chr29:19622520-19622040 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 37-534 |
| Cow position: | chr29:21426263-21425770 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 131 |
| Conread position: | 40-530 |
| Cow position: | chr29:646561-647031 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 123 |
| Conread position: | 40-530 |
| Cow position: | chr29:14210804-14210329 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 40-530 |
| Cow position: | chr29:39078941-39078465 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 43-530 |
| Cow position: | chr29:13582847-13583321 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 43-530 |
| Cow position: | chr29:18856181-18855708 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 128 |
| Conread position: | 44-355 |
| Cow position: | chr29:669290-668978 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 219 |
| Conread position: | 44-530 |
| Cow position: | chr29:2840609-2840103 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 75 |
| Conread position: | 46-534 |
| Cow position: | chr29:8664287-8664754 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 36 |
| Conread position: | 62-355 |
| Cow position: | chr29:35297618-35297912 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 198 |
| Conread position: | 62-530 |
| Cow position: | chr29:45205289-45205741 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 63-299 |
| Cow position: | chr29:38208283-38208049 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 10, 200 |
| Conread position: | 141-536 |
| Cow position: | chr29:27263029-27262651 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 51 |
| Conread position: | 377-529 |
| Cow position: | chr29:32287271-32287421 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 83, 30 |
Show alignments to all cow chromosomes.