Cow genome map

Conread name: Liv1-LVRM10162A01

Conread position: 3-530
Cow position: chr3:19939523-19940045 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 273

Conread position: 6-530
Cow position: chr3:6783006-6783521 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 178

Conread position: 6-530
Cow position: chr3:27919070-27919580 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 25

Conread position: 7-332
Cow position: chr3:24353556-24353873 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 7-534
Cow position: chr3:21182058-21181537 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 116

Conread position: 31-503
Cow position: chr3:42995001-42994545 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 6

Conread position: 31-514
Cow position: chr3:50126961-50126469 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 6

Conread position: 31-529
Cow position: chr3:46503218-46503710 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 6

Conread position: 31-531
Cow position: chr3:6686481-6686965 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 7

Conread position: 31-534
Cow position: chr3:29579298-29579785 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 6

Conread position: 31-534
Cow position: chr3:48229799-48229315 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 429, 6

Conread position: 33-293
Cow position: chr3:23213404-23213146 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 33-529
Cow position: chr3:42447780-42448263 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 101

Conread position: 33-530
Cow position: chr3:5994416-5993932 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 86

Conread position: 33-530
Cow position: chr3:10240335-10240816 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 46

Conread position: 33-531
Cow position: chr3:56339744-56339262 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 35

Conread position: 33-532
Cow position: chr3:63002871-63002389 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 231

Conread position: 33-534
Cow position: chr3:12679170-12678684 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 330

Conread position: 33-534
Cow position: chr3:48058682-48058204 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 34-176
Cow position: chr3:56145959-56146102 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 101

Conread position: 34-295
Cow position: chr3:42432895-42433148 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 34-296
Cow position: chr3:83232569-83232314 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 122, 0

Conread position: 34-313
Cow position: chr3:45894877-45894603 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 34-316
Cow position: chr3:18462896-18462618 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 181

Conread position: 34-316
Cow position: chr3:45773728-45773453 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 34-348
Cow position: chr3:56098890-56099213 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 312

Conread position: 34-355
Cow position: chr3:18355597-18355276 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 86, 23

Conread position: 34-355
Cow position: chr3:65582597-65582293 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 160, 0

Conread position: 34-464
Cow position: chr3:3841132-3840714 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 46

Conread position: 34-504
Cow position: chr3:63915442-63914983 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 229

Conread position: 34-529
Cow position: chr3:45975176-45975651 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 34-534
Cow position: chr3:6877497-6877013 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 74

Conread position: 34-534
Cow position: chr3:19720995-19720519 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 27

Conread position: 34-534
Cow position: chr3:64357116-64356641 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 29

Conread position: 35-321
Cow position: chr3:49678477-49678757 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 35-507
Cow position: chr3:83294236-83293791 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 35-534
Cow position: chr3:2907095-2906614 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 425, 52

Conread position: 36-198
Cow position: chr3:74058244-74058406 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 36-243
Cow position: chr3:56326601-56326804 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 93, 75

Conread position: 36-266
Cow position: chr3:34845814-34846051 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 183
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 70, 106

Conread position: 36-282
Cow position: chr3:30331810-30331565 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 228

Conread position: 36-294
Cow position: chr3:7480553-7480299 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-304
Cow position: chr3:36118339-36118604 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 51, 0

Conread position: 36-306
Cow position: chr3:34030229-34029961 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-320
Cow position: chr3:41211058-41210777 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-322
Cow position: chr3:24315144-24315429 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 228

Conread position: 36-322
Cow position: chr3:29330606-29330322 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-345
Cow position: chr3:20381218-20381528 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 223

Conread position: 36-354
Cow position: chr3:58948291-58948620 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 224

Conread position: 36-355
Cow position: chr3:45033423-45033746 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 227

Conread position: 36-397
Cow position: chr3:31420013-31420377 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 112

Conread position: 36-443
Cow position: chr3:18541465-18541072 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-458
Cow position: chr3:46680105-46680513 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 285
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 273, 144

Conread position: 36-527
Cow position: chr3:53516287-53516754 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:2710193-2709715 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 36-530
Cow position: chr3:2869455-2869941 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 36-530
Cow position: chr3:2918138-2918620 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-530
Cow position: chr3:4286760-4287242 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 227

Conread position: 36-530
Cow position: chr3:5884219-5884689 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:5953503-5953041 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 46

Conread position: 36-530
Cow position: chr3:7158049-7157567 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 227

Conread position: 36-530
Cow position: chr3:18812184-18812654 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:18860088-18860570 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 227

Conread position: 36-530
Cow position: chr3:19756273-19755779 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:19800501-19800019 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 227

Conread position: 36-530
Cow position: chr3:24445403-24444920 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:30315239-30315714 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:37969717-37970199 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 223

Conread position: 36-530
Cow position: chr3:40824067-40824546 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:46860626-46860137 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 227

Conread position: 36-530
Cow position: chr3:48842925-48843407 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 104

Conread position: 36-530
Cow position: chr3:49544535-49544052 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 84

Conread position: 36-530
Cow position: chr3:50916010-50916496 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 130

Conread position: 36-530
Cow position: chr3:57753471-57753953 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-530
Cow position: chr3:59862050-59862534 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 49

Conread position: 36-530
Cow position: chr3:64016688-64016217 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 83

Conread position: 36-530
Cow position: chr3:64651304-64651790 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 231

Conread position: 36-530
Cow position: chr3:66620859-66621336 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:68699288-68698820 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 36-530
Cow position: chr3:68873078-68872602 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 111

Conread position: 36-530
Cow position: chr3:75040485-75040004 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr3:78026742-78026256 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 47

Conread position: 36-532
Cow position: chr3:3523697-3524181 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 113

Conread position: 36-532
Cow position: chr3:32622367-32621883 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 207

Conread position: 36-534
Cow position: chr3:70887810-70888297 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 20

Conread position: 36-535
Cow position: chr3:57484050-57483569 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 69

Conread position: 40-352
Cow position: chr3:77424318-77424622 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 29

Conread position: 40-530
Cow position: chr3:23289655-23289178 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 40-531
Cow position: chr3:72630755-72631219 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 43-526
Cow position: chr3:47080730-47080261 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 220

Conread position: 43-532
Cow position: chr3:19879337-19879803 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 108

Conread position: 44-532
Cow position: chr3:56397869-56398338 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 42

Conread position: 49-138
Cow position: chr3:4028584-4028673 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 49-494
Cow position: chr3:49271419-49270991 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 33

Conread position: 49-530
Cow position: chr3:36863774-36863305 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 10

Conread position: 105-314
Cow position: chr3:24589022-24588815 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 154, 0

Conread position: 140-516
Cow position: chr3:48561186-48560814 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 9

Conread position: 186-530
Cow position: chr3:46016871-46017199 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 19

Conread position: 277-534
Cow position: chr3:15054758-15054523 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 188
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 176, 49

Conread position: 377-534
Cow position: chr3:65208200-65208356 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 76, 30

Conread position: 387-534
Cow position: chr3:56100672-56100525 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.