Cow genome map
Conread name: | Liv1-LVRM10162A01 |
Conread position: | 4-351 |
Cow position: | chr5:29766422-29766790 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 242 |
Conread position: | 6-526 |
Cow position: | chr5:4018665-4018139 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 370 |
Conread position: | 6-530 |
Cow position: | chr5:58196559-58197075 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 261 |
Conread position: | 7-532 |
Cow position: | chr5:28012191-28012733 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 274 |
Conread position: | 31-309 |
Cow position: | chr5:49591525-49591251 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 31-454 |
Cow position: | chr5:34902764-34903174 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 295 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 120, 7 |
Conread position: | 31-527 |
Cow position: | chr5:41961150-41960681 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 6 |
Conread position: | 31-534 |
Cow position: | chr5:45700888-45701377 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 6 |
Conread position: | 33-284 |
Cow position: | chr5:26067327-26067073 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 191 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 87, 138 |
Conread position: | 33-459 |
Cow position: | chr5:27002584-27002990 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 133 |
Conread position: | 33-529 |
Cow position: | chr5:73488983-73488501 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 87 |
Conread position: | 33-530 |
Cow position: | chr5:3786498-3786986 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 29 |
Conread position: | 33-530 |
Cow position: | chr5:55628566-55629051 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 86 |
Conread position: | 33-531 |
Cow position: | chr5:49758085-49757617 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 46 |
Conread position: | 33-534 |
Cow position: | chr5:41528199-41527732 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 276, 236 |
Conread position: | 33-534 |
Cow position: | chr5:46629615-46629115 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 246 |
Conread position: | 34-290 |
Cow position: | chr5:36444102-36443849 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 186 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 34-351 |
Cow position: | chr5:39246236-39245919 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 61 |
Conread position: | 34-355 |
Cow position: | chr5:32308816-32308496 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 63 |
Conread position: | 34-458 |
Cow position: | chr5:32947632-32948049 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 232 |
Conread position: | 34-504 |
Cow position: | chr5:41554754-41554316 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 33 |
Conread position: | 34-522 |
Cow position: | chr5:38073607-38074083 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 229 |
Conread position: | 34-527 |
Cow position: | chr5:4385818-4386297 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 100 |
Conread position: | 34-528 |
Cow position: | chr5:4069796-4070277 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 85 |
Conread position: | 34-528 |
Cow position: | chr5:47893964-47893487 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 254 |
Conread position: | 34-529 |
Cow position: | chr5:10919401-10919879 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 86 |
Conread position: | 34-530 |
Cow position: | chr5:14784786-14784307 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 284, 54 |
Conread position: | 34-530 |
Cow position: | chr5:37732927-37733407 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 47 |
Conread position: | 35-350 |
Cow position: | chr5:27056105-27055783 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 236 |
Conread position: | 35-354 |
Cow position: | chr5:59639358-59639671 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 92 |
Conread position: | 36-184 |
Cow position: | chr5:59144819-59144967 (view UCSC Genome Browser custom track) |
Alignm length: | 149 |
Alignm identity: | 107 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 36-251 |
Cow position: | chr5:7274409-7274621 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 169 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-253 |
Cow position: | chr5:48467703-48467486 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 160 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 36-262 |
Cow position: | chr5:44784336-44784111 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 166 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 204, 0 |
Conread position: | 36-294 |
Cow position: | chr5:241776-242028 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 0 |
Conread position: | 36-303 |
Cow position: | chr5:46645542-46645801 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 197 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 36-307 |
Cow position: | chr5:46776647-46776916 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 227, 0 |
Conread position: | 36-355 |
Cow position: | chr5:4757586-4757267 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 227 |
Conread position: | 36-355 |
Cow position: | chr5:18664369-18664693 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 170, 232 |
Conread position: | 36-355 |
Cow position: | chr5:23959738-23959419 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 204 |
Conread position: | 36-443 |
Cow position: | chr5:44460060-44460454 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 227 |
Conread position: | 36-505 |
Cow position: | chr5:46005275-46004821 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 151 |
Conread position: | 36-506 |
Cow position: | chr5:58152189-58151745 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 315 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 174, 117 |
Conread position: | 36-529 |
Cow position: | chr5:24099248-24099724 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 51 |
Conread position: | 36-529 |
Cow position: | chr5:57481961-57481480 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-530 |
Cow position: | chr5:1341454-1340971 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 98 |
Conread position: | 36-530 |
Cow position: | chr5:3503538-3503049 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 46 |
Conread position: | 36-530 |
Cow position: | chr5:3965026-3965506 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 114 |
Conread position: | 36-530 |
Cow position: | chr5:6154322-6153843 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 95 |
Conread position: | 36-530 |
Cow position: | chr5:10842801-10842326 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 225 |
Conread position: | 36-530 |
Cow position: | chr5:26078620-26078133 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 112 |
Conread position: | 36-530 |
Cow position: | chr5:30579907-30580398 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-530 |
Cow position: | chr5:35300676-35301158 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 150 |
Conread position: | 36-530 |
Cow position: | chr5:42505581-42506064 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 228 |
Conread position: | 36-530 |
Cow position: | chr5:46807889-46808372 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 227 |
Conread position: | 36-530 |
Cow position: | chr5:47830494-47830018 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 227 |
Conread position: | 36-530 |
Cow position: | chr5:48808161-48807679 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-530 |
Cow position: | chr5:49519141-49519620 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 18 |
Conread position: | 36-530 |
Cow position: | chr5:54792059-54791573 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 88 |
Conread position: | 36-530 |
Cow position: | chr5:64781437-64780956 (view UCSC Genome Browser custom track) |
Alignm length: | 500 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 82 |
Conread position: | 36-532 |
Cow position: | chr5:10775691-10775206 (view UCSC Genome Browser custom track) |
Alignm length: | 501 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 326, 135 |
Conread position: | 36-532 |
Cow position: | chr5:18121900-18121419 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 353 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 89 |
Conread position: | 36-534 |
Cow position: | chr5:2915027-2915513 (view UCSC Genome Browser custom track) |
Alignm length: | 508 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-534 |
Cow position: | chr5:6588445-6587957 (view UCSC Genome Browser custom track) |
Alignm length: | 514 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 217 |
Conread position: | 36-534 |
Cow position: | chr5:12643149-12642681 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 46 |
Conread position: | 36-534 |
Cow position: | chr5:27908695-27908205 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 48 |
Conread position: | 36-534 |
Cow position: | chr5:46737996-46737513 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 36-538 |
Cow position: | chr5:45181567-45181077 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 227 |
Conread position: | 37-240 |
Cow position: | chr5:51335682-51335480 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 140 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 193, 0 |
Conread position: | 38-355 |
Cow position: | chr5:51770363-51770051 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 225 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 271, 29 |
Conread position: | 38-491 |
Cow position: | chr5:35526381-35526830 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 113 |
Conread position: | 40-530 |
Cow position: | chr5:34697185-34697661 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 79 |
Conread position: | 43-526 |
Cow position: | chr5:32773359-32773820 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 417, 220 |
Conread position: | 44-529 |
Cow position: | chr5:31707136-31707621 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 290, 219 |
Conread position: | 45-314 |
Cow position: | chr5:53703572-53703308 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 196 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 37, 44 |
Conread position: | 45-534 |
Cow position: | chr5:14344818-14344371 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 329 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 63-519 |
Cow position: | chr5:46664622-46665065 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 256, 200 |
Conread position: | 63-530 |
Cow position: | chr5:59282924-59283376 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 56 |
Conread position: | 69-531 |
Cow position: | chr5:46668569-46669003 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 243, 7 |
Conread position: | 72-322 |
Cow position: | chr5:32363587-32363830 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 187 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 98, 43 |
Conread position: | 88-354 |
Cow position: | chr5:48532659-48532919 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 190 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 53, 9 |
Conread position: | 91-534 |
Cow position: | chr5:13046084-13046520 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 74 |
Conread position: | 101-530 |
Cow position: | chr5:307685-307267 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 162 |
Conread position: | 123-527 |
Cow position: | chr5:9419406-9419018 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 135 |
Conread position: | 146-534 |
Cow position: | chr5:18885838-18885470 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 273 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 199, 77 |
Conread position: | 208-534 |
Cow position: | chr5:24999236-24998926 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 252, 64 |
Conread position: | 283-533 |
Cow position: | chr5:48855038-48855274 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 182 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 35, 77 |
Show alignments to all cow chromosomes.