Cow genome map

Conread name: Liv1-LVRM10162A01

Conread position: 4-351
Cow position: chr5:29766422-29766790 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 242

Conread position: 6-526
Cow position: chr5:4018665-4018139 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 370

Conread position: 6-530
Cow position: chr5:58196559-58197075 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 261

Conread position: 7-532
Cow position: chr5:28012191-28012733 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 274

Conread position: 31-309
Cow position: chr5:49591525-49591251 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 31-454
Cow position: chr5:34902764-34903174 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 295
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 120, 7

Conread position: 31-527
Cow position: chr5:41961150-41960681 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 6

Conread position: 31-534
Cow position: chr5:45700888-45701377 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 6

Conread position: 33-284
Cow position: chr5:26067327-26067073 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 87, 138

Conread position: 33-459
Cow position: chr5:27002584-27002990 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 133

Conread position: 33-529
Cow position: chr5:73488983-73488501 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 87

Conread position: 33-530
Cow position: chr5:3786498-3786986 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 29

Conread position: 33-530
Cow position: chr5:55628566-55629051 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 33-531
Cow position: chr5:49758085-49757617 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 46

Conread position: 33-534
Cow position: chr5:41528199-41527732 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 236

Conread position: 33-534
Cow position: chr5:46629615-46629115 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 246

Conread position: 34-290
Cow position: chr5:36444102-36443849 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 82, 0

Conread position: 34-351
Cow position: chr5:39246236-39245919 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 61

Conread position: 34-355
Cow position: chr5:32308816-32308496 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 63

Conread position: 34-458
Cow position: chr5:32947632-32948049 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 232

Conread position: 34-504
Cow position: chr5:41554754-41554316 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 33

Conread position: 34-522
Cow position: chr5:38073607-38074083 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 229

Conread position: 34-527
Cow position: chr5:4385818-4386297 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 34-528
Cow position: chr5:4069796-4070277 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 34-528
Cow position: chr5:47893964-47893487 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 254

Conread position: 34-529
Cow position: chr5:10919401-10919879 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 86

Conread position: 34-530
Cow position: chr5:14784786-14784307 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 54

Conread position: 34-530
Cow position: chr5:37732927-37733407 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 47

Conread position: 35-350
Cow position: chr5:27056105-27055783 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 236

Conread position: 35-354
Cow position: chr5:59639358-59639671 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 92

Conread position: 36-184
Cow position: chr5:59144819-59144967 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 36-251
Cow position: chr5:7274409-7274621 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 78, 83

Conread position: 36-253
Cow position: chr5:48467703-48467486 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 36-262
Cow position: chr5:44784336-44784111 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 204, 0

Conread position: 36-294
Cow position: chr5:241776-242028 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 36-303
Cow position: chr5:46645542-46645801 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 197
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 31, 0

Conread position: 36-307
Cow position: chr5:46776647-46776916 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-355
Cow position: chr5:4757586-4757267 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-355
Cow position: chr5:18664369-18664693 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 232

Conread position: 36-355
Cow position: chr5:23959738-23959419 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 204

Conread position: 36-443
Cow position: chr5:44460060-44460454 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-505
Cow position: chr5:46005275-46004821 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 151

Conread position: 36-506
Cow position: chr5:58152189-58151745 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 315
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 174, 117

Conread position: 36-529
Cow position: chr5:24099248-24099724 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 51

Conread position: 36-529
Cow position: chr5:57481961-57481480 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr5:1341454-1340971 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 98

Conread position: 36-530
Cow position: chr5:3503538-3503049 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 46

Conread position: 36-530
Cow position: chr5:3965026-3965506 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 114

Conread position: 36-530
Cow position: chr5:6154322-6153843 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 95

Conread position: 36-530
Cow position: chr5:10842801-10842326 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 225

Conread position: 36-530
Cow position: chr5:26078620-26078133 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 112

Conread position: 36-530
Cow position: chr5:30579907-30580398 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr5:35300676-35301158 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 150

Conread position: 36-530
Cow position: chr5:42505581-42506064 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 228

Conread position: 36-530
Cow position: chr5:46807889-46808372 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 36-530
Cow position: chr5:47830494-47830018 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 227

Conread position: 36-530
Cow position: chr5:48808161-48807679 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr5:49519141-49519620 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 18

Conread position: 36-530
Cow position: chr5:54792059-54791573 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 88

Conread position: 36-530
Cow position: chr5:64781437-64780956 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 82

Conread position: 36-532
Cow position: chr5:10775691-10775206 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 135

Conread position: 36-532
Cow position: chr5:18121900-18121419 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 89

Conread position: 36-534
Cow position: chr5:2915027-2915513 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-534
Cow position: chr5:6588445-6587957 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 217

Conread position: 36-534
Cow position: chr5:12643149-12642681 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 46

Conread position: 36-534
Cow position: chr5:27908695-27908205 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 48

Conread position: 36-534
Cow position: chr5:46737996-46737513 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-538
Cow position: chr5:45181567-45181077 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 227

Conread position: 37-240
Cow position: chr5:51335682-51335480 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 193, 0

Conread position: 38-355
Cow position: chr5:51770363-51770051 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 271, 29

Conread position: 38-491
Cow position: chr5:35526381-35526830 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 113

Conread position: 40-530
Cow position: chr5:34697185-34697661 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 43-526
Cow position: chr5:32773359-32773820 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 220

Conread position: 44-529
Cow position: chr5:31707136-31707621 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 219

Conread position: 45-314
Cow position: chr5:53703572-53703308 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 37, 44

Conread position: 45-534
Cow position: chr5:14344818-14344371 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 329
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 58, 0

Conread position: 63-519
Cow position: chr5:46664622-46665065 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 200

Conread position: 63-530
Cow position: chr5:59282924-59283376 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 56

Conread position: 69-531
Cow position: chr5:46668569-46669003 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 7

Conread position: 72-322
Cow position: chr5:32363587-32363830 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 98, 43

Conread position: 88-354
Cow position: chr5:48532659-48532919 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 9

Conread position: 91-534
Cow position: chr5:13046084-13046520 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 74

Conread position: 101-530
Cow position: chr5:307685-307267 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 162

Conread position: 123-527
Cow position: chr5:9419406-9419018 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 135

Conread position: 146-534
Cow position: chr5:18885838-18885470 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 199, 77

Conread position: 208-534
Cow position: chr5:24999236-24998926 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 64

Conread position: 283-533
Cow position: chr5:48855038-48855274 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 77

Show alignments to all cow chromosomes.