Cow genome map

Conread name: Liv1-LVRM10162A01

Conread position: 1-534
Cow position: chr6:8021568-8022090 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 105

Conread position: 4-506
Cow position: chr6:38271576-38272057 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 51

Conread position: 6-392
Cow position: chr6:59918390-59918006 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 79

Conread position: 6-534
Cow position: chr6:13310676-13310153 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 261

Conread position: 7-324
Cow position: chr6:40316063-40316392 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 322

Conread position: 7-530
Cow position: chr6:15279129-15278616 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 135

Conread position: 7-530
Cow position: chr6:40553888-40553375 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 116

Conread position: 7-530
Cow position: chr6:47042520-47042017 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 120

Conread position: 26-285
Cow position: chr6:48369817-48370064 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 64, 150

Conread position: 30-266
Cow position: chr6:15021928-15022156 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 33-231
Cow position: chr6:10609621-10609820 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 116, 85

Conread position: 33-261
Cow position: chr6:12530205-12530429 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 200, 150

Conread position: 33-529
Cow position: chr6:1821911-1821414 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 86

Conread position: 33-530
Cow position: chr6:40275803-40276285 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 207

Conread position: 33-530
Cow position: chr6:52693732-52694221 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 101

Conread position: 33-534
Cow position: chr6:24239773-24240256 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 101

Conread position: 34-200
Cow position: chr6:38900457-38900291 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 34-345
Cow position: chr6:43792997-43792689 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 34-354
Cow position: chr6:1099442-1099122 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 218

Conread position: 34-355
Cow position: chr6:6475151-6474824 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 229

Conread position: 34-458
Cow position: chr6:65881929-65882338 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 56

Conread position: 34-519
Cow position: chr6:41190038-41190500 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 34-528
Cow position: chr6:66232530-66233006 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 226

Conread position: 34-529
Cow position: chr6:6567306-6567780 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 34-530
Cow position: chr6:185066-184578 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 109

Conread position: 34-530
Cow position: chr6:51715256-51715725 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 85

Conread position: 34-532
Cow position: chr6:12665603-12665115 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 118

Conread position: 34-534
Cow position: chr6:10644462-10644941 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 81

Conread position: 34-534
Cow position: chr6:13316755-13316268 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 48

Conread position: 34-534
Cow position: chr6:28169620-28170105 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 100

Conread position: 35-354
Cow position: chr6:56043002-56042681 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 270

Conread position: 35-534
Cow position: chr6:58065451-58065941 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 61

Conread position: 36-188
Cow position: chr6:29312244-29312396 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 83

Conread position: 36-205
Cow position: chr6:14389296-14389465 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 36-206
Cow position: chr6:28275699-28275867 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 90, 26

Conread position: 36-259
Cow position: chr6:27471321-27471540 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 78, 51

Conread position: 36-283
Cow position: chr6:64716706-64716949 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 26

Conread position: 36-304
Cow position: chr6:7140743-7140479 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 36-306
Cow position: chr6:185750-185482 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 36-310
Cow position: chr6:16052598-16052871 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 228

Conread position: 36-316
Cow position: chr6:40252379-40252655 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 36-354
Cow position: chr6:11724388-11724077 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 242
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 10

Conread position: 36-355
Cow position: chr6:2375417-2375736 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 204

Conread position: 36-483
Cow position: chr6:44032511-44032940 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 49

Conread position: 36-527
Cow position: chr6:3149982-3150460 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 233

Conread position: 36-529
Cow position: chr6:20560388-20559904 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-529
Cow position: chr6:44149838-44149359 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 227

Conread position: 36-530
Cow position: chr6:914353-914833 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 20

Conread position: 36-530
Cow position: chr6:3276656-3276172 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr6:3888766-3888306 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 78

Conread position: 36-530
Cow position: chr6:5949059-5948583 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr6:15140463-15139975 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr6:21973375-21973870 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 115

Conread position: 36-530
Cow position: chr6:25214942-25215404 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 49

Conread position: 36-530
Cow position: chr6:26670147-26669665 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 199

Conread position: 36-530
Cow position: chr6:27170293-27170779 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 228

Conread position: 36-530
Cow position: chr6:30274173-30273695 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 82

Conread position: 36-530
Cow position: chr6:34891406-34890923 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr6:40866599-40866124 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 36-530
Cow position: chr6:43618434-43618921 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 36-530
Cow position: chr6:51086661-51087140 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 98

Conread position: 36-530
Cow position: chr6:51730816-51731280 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 82

Conread position: 36-530
Cow position: chr6:65821255-65820773 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 227

Conread position: 36-530
Cow position: chr6:68027640-68028115 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 228

Conread position: 36-531
Cow position: chr6:3487703-3487227 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 46

Conread position: 36-532
Cow position: chr6:702920-703416 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 98

Conread position: 36-532
Cow position: chr6:43999780-44000265 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 175

Conread position: 36-534
Cow position: chr6:39334151-39333664 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 37-355
Cow position: chr6:16621151-16621468 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 142, 58

Conread position: 38-480
Cow position: chr6:39438486-39438915 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 18

Conread position: 40-528
Cow position: chr6:27529282-27528800 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 40-530
Cow position: chr6:8202905-8203377 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 40-530
Cow position: chr6:35875992-35875512 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 22

Conread position: 43-355
Cow position: chr6:30479827-30480140 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 157

Conread position: 43-530
Cow position: chr6:17046784-17047253 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 75

Conread position: 43-530
Cow position: chr6:28490843-28490369 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 182

Conread position: 44-530
Cow position: chr6:13847752-13848218 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 220

Conread position: 44-532
Cow position: chr6:13944634-13945113 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 127

Conread position: 46-530
Cow position: chr6:8760562-8760095 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 73

Conread position: 48-177
Cow position: chr6:36526996-36527124 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 71

Conread position: 48-342
Cow position: chr6:28133661-28133957 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 68

Conread position: 48-526
Cow position: chr6:1410928-1410456 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 221

Conread position: 49-440
Cow position: chr6:33899506-33899143 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 264
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 56-534
Cow position: chr6:34443652-34444125 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 54

Conread position: 59-526
Cow position: chr6:1404851-1404390 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 210

Conread position: 59-530
Cow position: chr6:17597577-17597108 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 77

Conread position: 61-355
Cow position: chr6:46573864-46573569 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 202

Conread position: 62-530
Cow position: chr6:50634691-50635155 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 52

Conread position: 64-530
Cow position: chr6:65842371-65842813 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 70

Conread position: 85-308
Cow position: chr6:25794046-25793825 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 110-354
Cow position: chr6:18973616-18973369 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 164

Conread position: 118-534
Cow position: chr6:10339796-10339413 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 44

Conread position: 121-534
Cow position: chr6:15477966-15478378 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 12

Conread position: 215-534
Cow position: chr6:50711-50402 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 54

Show alignments to all cow chromosomes.