Cow genome map
| Conread name: | Liv1-LVRM10162A01 |
| Conread position: | 6-530 |
| Cow position: | chr9:45873949-45874467 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 261 |
| Conread position: | 6-532 |
| Cow position: | chr9:28678576-28679105 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 269 |
| Conread position: | 9-527 |
| Cow position: | chr9:50729508-50729012 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 24 |
| Conread position: | 11-414 |
| Cow position: | chr9:2171672-2172068 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 31-278 |
| Cow position: | chr9:6829672-6829430 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 88 |
| Conread position: | 31-355 |
| Cow position: | chr9:43664447-43664761 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 31-480 |
| Cow position: | chr9:34722549-34722987 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 31-532 |
| Cow position: | chr9:828491-827977 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 7 |
| Conread position: | 33-280 |
| Cow position: | chr9:59173500-59173258 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 101 |
| Conread position: | 33-437 |
| Cow position: | chr9:9706194-9706582 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 34 |
| Conread position: | 33-497 |
| Cow position: | chr9:5515064-5515515 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 112 |
| Conread position: | 33-530 |
| Cow position: | chr9:1075572-1075060 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 232 |
| Conread position: | 33-530 |
| Cow position: | chr9:10937242-10937724 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 34-207 |
| Cow position: | chr9:30488215-30488388 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-337 |
| Cow position: | chr9:3566200-3565897 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 100 |
| Conread position: | 34-426 |
| Cow position: | chr9:2053408-2053783 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 46 |
| Conread position: | 34-525 |
| Cow position: | chr9:28022450-28022930 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 34-530 |
| Cow position: | chr9:4649948-4649478 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 196 |
| Conread position: | 34-534 |
| Cow position: | chr9:1980918-1981407 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 223 |
| Conread position: | 34-534 |
| Cow position: | chr9:22431923-22432406 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 76 |
| Conread position: | 34-534 |
| Cow position: | chr9:25187754-25188234 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 34-534 |
| Cow position: | chr9:54925198-54925679 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 109 |
| Conread position: | 35-523 |
| Cow position: | chr9:13475140-13474649 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 161 |
| Conread position: | 35-527 |
| Cow position: | chr9:3763651-3764125 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 69 |
| Conread position: | 35-530 |
| Cow position: | chr9:9329243-9328778 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 338 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 23, 191 |
| Conread position: | 35-534 |
| Cow position: | chr9:25633358-25632885 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 167 |
| Conread position: | 36-199 |
| Cow position: | chr9:30827325-30827488 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-204 |
| Cow position: | chr9:3998660-3998827 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 36-238 |
| Cow position: | chr9:36725149-36725350 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 36-294 |
| Cow position: | chr9:42569553-42569807 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 36-323 |
| Cow position: | chr9:7003457-7003732 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 36-355 |
| Cow position: | chr9:1251349-1251021 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 200, 234 |
| Conread position: | 36-458 |
| Cow position: | chr9:25035064-25034654 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 228 |
| Conread position: | 36-459 |
| Cow position: | chr9:2209939-2210368 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 36-497 |
| Cow position: | chr9:3148623-3148182 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 227 |
| Conread position: | 36-502 |
| Cow position: | chr9:221880-221411 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 231 |
| Conread position: | 36-505 |
| Cow position: | chr9:3167592-3168031 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 10 |
| Conread position: | 36-523 |
| Cow position: | chr9:16176420-16176889 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 36-528 |
| Cow position: | chr9:37970548-37970080 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-528 |
| Cow position: | chr9:51181537-51181050 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-529 |
| Cow position: | chr9:10322452-10322929 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-529 |
| Cow position: | chr9:29628101-29627629 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 54 |
| Conread position: | 36-530 |
| Cow position: | chr9:130539-130035 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 75 |
| Conread position: | 36-530 |
| Cow position: | chr9:2498334-2497850 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 77 |
| Conread position: | 36-530 |
| Cow position: | chr9:3543509-3543996 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:5004623-5005098 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 36-530 |
| Cow position: | chr9:6249948-6250427 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:7061433-7060954 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 36-530 |
| Cow position: | chr9:9013749-9014213 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:17305329-17304848 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:22654221-22654705 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 36-530 |
| Cow position: | chr9:28440456-28440938 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 227 |
| Conread position: | 36-530 |
| Cow position: | chr9:29027560-29027082 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:30673014-30673504 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-530 |
| Cow position: | chr9:31808230-31808706 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 75 |
| Conread position: | 36-530 |
| Cow position: | chr9:32969599-32970076 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 50 |
| Conread position: | 36-530 |
| Cow position: | chr9:37162165-37161683 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 84 |
| Conread position: | 36-530 |
| Cow position: | chr9:42310334-42310807 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 36-530 |
| Cow position: | chr9:47002843-47003315 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 36-530 |
| Cow position: | chr9:50791360-50791839 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 227 |
| Conread position: | 36-530 |
| Cow position: | chr9:51211328-51211810 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 227 |
| Conread position: | 36-530 |
| Cow position: | chr9:59482143-59481667 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 47 |
| Conread position: | 36-530 |
| Cow position: | chr9:59536745-59537224 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 36-530 |
| Cow position: | chr9:60277367-60276890 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 98 |
| Conread position: | 36-531 |
| Cow position: | chr9:4943163-4942680 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 199 |
| Conread position: | 36-532 |
| Cow position: | chr9:17063741-17063252 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 227 |
| Conread position: | 37-532 |
| Cow position: | chr9:651365-650896 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 126 |
| Conread position: | 40-431 |
| Cow position: | chr9:2186530-2186910 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 107 |
| Conread position: | 40-524 |
| Cow position: | chr9:27035335-27035806 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 44-355 |
| Cow position: | chr9:780149-779842 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 96 |
| Conread position: | 44-527 |
| Cow position: | chr9:4533151-4533620 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 45-530 |
| Cow position: | chr9:27935037-27935506 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 195 |
| Conread position: | 45-530 |
| Cow position: | chr9:31065376-31065847 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 64 |
| Conread position: | 48-530 |
| Cow position: | chr9:25903170-25903634 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 216 |
| Conread position: | 49-354 |
| Cow position: | chr9:2476420-2476722 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 281, 30 |
| Conread position: | 50-512 |
| Cow position: | chr9:33243675-33243216 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 207, 8 |
| Conread position: | 57-352 |
| Cow position: | chr9:28696130-28696423 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 175 |
| Conread position: | 59-530 |
| Cow position: | chr9:18509142-18508693 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 62-530 |
| Cow position: | chr9:64015967-64015518 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 141-528 |
| Cow position: | chr9:30435323-30435698 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 377-517 |
| Cow position: | chr9:18211202-18211341 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 77, 30 |
Show alignments to all cow chromosomes.