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Cow genome map

           
Conread name:
           
Liv1-LVRM1B030176
        

               
Conread position:
               
261-677
               

               
Cow position:
               
chr11:19246950-19247358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
264-528
               

               
Cow position:
               
chr11:49396274-49396538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
269-586
               

               
Cow position:
               
chr11:49255662-49255336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
28, 207
               

               
Conread position:
               
271-650
               

               
Cow position:
               
chr11:61454262-61454662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
275-547
               

               
Cow position:
               
chr11:66939350-66939624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
277-656
               

               
Cow position:
               
chr11:83398144-83397764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
133, 33
               

               
Conread position:
               
280-520
               

               
Cow position:
               
chr11:63498896-63499131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
286-571
               

               
Cow position:
               
chr11:20205630-20205907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
287-493
               

               
Cow position:
               
chr11:44176823-44176618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
291-476
               

               
Cow position:
               
chr11:4602376-4602192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
81, 105
               

               
Conread position:
               
291-677
               

               
Cow position:
               
chr11:2084372-2083974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
292-528
               

               
Cow position:
               
chr11:37099949-37100181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
98, 25
               

               
Conread position:
               
292-677
               

               
Cow position:
               
chr11:48296249-48295870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 83
               

               
Conread position:
               
293-625
               

               
Cow position:
               
chr11:31228177-31227858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
12, 64
               

               
Conread position:
               
298-677
               

               
Cow position:
               
chr11:53778840-53778452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 268
               

               
Conread position:
               
301-525
               

               
Cow position:
               
chr11:66099639-66099872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
302-505
               

               
Cow position:
               
chr11:69676143-69676342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
303-497
               

               
Cow position:
               
chr11:81175810-81175615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
305-513
               

               
Cow position:
               
chr11:81065838-81066047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
18, 96
               

               
Conread position:
               
305-648
               

               
Cow position:
               
chr11:70756686-70756348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
34, 102
               

               
Conread position:
               
306-522
               

               
Cow position:
               
chr11:58048542-58048325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 95
               

               
Conread position:
               
307-542
               

               
Cow position:
               
chr11:63165442-63165673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
307-547
               

               
Cow position:
               
chr11:30894797-30895035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 23
               

               
Conread position:
               
308-522
               

               
Cow position:
               
chr11:63485139-63484932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
308-542
               

               
Cow position:
               
chr11:2900503-2900747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
308-625
               

               
Cow position:
               
chr11:29659768-29659452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
20, 58
               

               
Conread position:
               
308-677
               

               
Cow position:
               
chr11:30355250-30354907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
309-649
               

               
Cow position:
               
chr11:75285550-75285902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 24
               

               
Conread position:
               
310-501
               

               
Cow position:
               
chr11:53651845-53651655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
310-514
               

               
Cow position:
               
chr11:58186078-58185884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
310-630
               

               
Cow position:
               
chr11:8670224-8669891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
310-657
               

               
Cow position:
               
chr11:53773890-53773534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 90
               

               
Conread position:
               
311-561
               

               
Cow position:
               
chr11:71854073-71854324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
311-637
               

               
Cow position:
               
chr11:53510293-53510620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 19
               

               
Conread position:
               
311-672
               

               
Cow position:
               
chr11:48544640-48544279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
312-655
               

               
Cow position:
               
chr11:15772508-15772855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
22, 212
               

               
Conread position:
               
312-671
               

               
Cow position:
               
chr11:2917388-2917742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 84
               

               
Conread position:
               
313-623
               

               
Cow position:
               
chr11:42183241-42182940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
313-655
               

               
Cow position:
               
chr11:63998888-63999230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 16
               

               
Conread position:
               
313-671
               

               
Cow position:
               
chr11:2925105-2925444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 68
               

               
Conread position:
               
313-677
               

               
Cow position:
               
chr11:62490624-62490271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 52
               

               
Conread position:
               
313-677
               

               
Cow position:
               
chr11:63065856-63065494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
24, 57
               

               
Conread position:
               
314-457
               

               
Cow position:
               
chr11:43736905-43737049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
74, 132
               

               
Conread position:
               
314-502
               

               
Cow position:
               
chr11:25721802-25721981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
20, 55
               

               
Conread position:
               
314-514
               

               
Cow position:
               
chr11:80007860-80008066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
76, 136
               

               
Conread position:
               
314-522
               

               
Cow position:
               
chr11:42084473-42084682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 18
               

               
Conread position:
               
314-561
               

               
Cow position:
               
chr11:5218964-5219204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
314-648
               

               
Cow position:
               
chr11:61526282-61525935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 151
               

               
Conread position:
               
314-665
               

               
Cow position:
               
chr11:64077300-64077654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 85
               

               
Conread position:
               
314-673
               

               
Cow position:
               
chr11:71390373-71390722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 24
               

               
Conread position:
               
314-677
               

               
Cow position:
               
chr11:27913489-27913111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
21, 88
               

               
Conread position:
               
314-677
               

               
Cow position:
               
chr11:80756586-80756946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 83
               

               
Conread position:
               
315-497
               

               
Cow position:
               
chr11:7617003-7617188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 104
               

               
Conread position:
               
315-504
               

               
Cow position:
               
chr11:4621236-4621419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
315-519
               

               
Cow position:
               
chr11:42206617-42206418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
315-520
               

               
Cow position:
               
chr11:57767393-57767186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
26, 87
               

               
Conread position:
               
315-630
               

               
Cow position:
               
chr11:39060404-39060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
285, 83
               

               
Conread position:
               
315-649
               

               
Cow position:
               
chr11:19591794-19592125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
315-650
               

               
Cow position:
               
chr11:59024149-59024489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 144
               

               
Conread position:
               
315-655
               

               
Cow position:
               
chr11:62663045-62663361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
315-664
               

               
Cow position:
               
chr11:81143342-81143701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
25, 9
               

               
Conread position:
               
315-677
               

               
Cow position:
               
chr11:33347997-33348348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
315-677
               

               
Cow position:
               
chr11:80923123-80923486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
316-511
               

               
Cow position:
               
chr11:26442302-26442500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
316-528
               

               
Cow position:
               
chr11:15366774-15366985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
316-674
               

               
Cow position:
               
chr11:30476197-30475843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
317-495
               

               
Cow position:
               
chr11:67208447-67208273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
317-497
               

               
Cow position:
               
chr11:25968652-25968835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
317-507
               

               
Cow position:
               
chr11:29782357-29782174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
10, 56
               

               
Conread position:
               
317-517
               

               
Cow position:
               
chr11:79666065-79666263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
317-538
               

               
Cow position:
               
chr11:25783911-25783690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
317-614
               

               
Cow position:
               
chr11:58594184-58594487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 264
               

               
Conread position:
               
317-622
               

               
Cow position:
               
chr11:15467646-15467357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
317-638
               

               
Cow position:
               
chr11:21508211-21507883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 300
               

               
Conread position:
               
317-641
               

               
Cow position:
               
chr11:56288743-56288420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
317-653
               

               
Cow position:
               
chr11:70206514-70206184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
268, 73
               

               
Conread position:
               
317-655
               

               
Cow position:
               
chr11:66041475-66041131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
317-664
               

               
Cow position:
               
chr11:64029069-64029408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 16
               

               
Conread position:
               
317-672
               

               
Cow position:
               
chr11:39115672-39115336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
268, 78
               

               
Conread position:
               
317-672
               

               
Cow position:
               
chr11:80819825-80820156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
317-673
               

               
Cow position:
               
chr11:77758561-77758916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
317-676
               

               
Cow position:
               
chr11:17889526-17889888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
317-676
               

               
Cow position:
               
chr11:77745046-77745417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
17, 138
               

               
Conread position:
               
317-677
               

               
Cow position:
               
chr11:84385441-84385800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 47
               

               
Conread position:
               
318-541
               

               
Cow position:
               
chr11:71022198-71021975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
58, 75
               

               
Conread position:
               
318-561
               

               
Cow position:
               
chr11:18447303-18447537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
318-630
               

               
Cow position:
               
chr11:5433465-5433149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
318-631
               

               
Cow position:
               
chr11:8584511-8584204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
246, 15
               

               
Conread position:
               
318-672
               

               
Cow position:
               
chr11:46580547-46580198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
318-677
               

               
Cow position:
               
chr11:79728473-79728832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
20, 83
               

               
Conread position:
               
319-497
               

               
Cow position:
               
chr11:8421928-8422099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
319-501
               

               
Cow position:
               
chr11:37565065-37564888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr11:23278766-23278952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 48
               

               
Conread position:
               
319-503
               

               
Cow position:
               
chr11:26057447-26057638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
319-505
               

               
Cow position:
               
chr11:36104504-36104323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
158, 38
               

               
Conread position:
               
319-522
               

               
Cow position:
               
chr11:12555105-12555312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
319-523
               

               
Cow position:
               
chr11:49210622-49210829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
319-527
               

               
Cow position:
               
chr11:45350309-45350523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
319-527
               

               
Cow position:
               
chr11:64781288-64781075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
319-533
               

               
Cow position:
               
chr11:48315202-48315414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
319-550
               

               
Cow position:
               
chr11:53717609-53717841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 67
               

               
Conread position:
               
319-558
               

               
Cow position:
               
chr11:15369583-15369344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
319-562
               

               
Cow position:
               
chr11:56311403-56311642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
71, 123
               

               
Conread position:
               
319-567
               

               
Cow position:
               
chr11:11523244-11523518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
67, 33
               

               
Conread position:
               
319-570
               

               
Cow position:
               
chr11:72884416-72884648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
319-581
               

               
Cow position:
               
chr11:25119738-25119997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
319-583
               

               
Cow position:
               
chr11:82740688-82740442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
319-618
               

               
Cow position:
               
chr11:16315073-16314769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 133
               

               
Conread position:
               
319-618
               

               
Cow position:
               
chr11:73573844-73573543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
319-627
               

               
Cow position:
               
chr11:48086115-48085803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 72
               

               
Conread position:
               
319-636
               

               
Cow position:
               
chr11:5217263-5217587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 106
               

               
Conread position:
               
319-636
               

               
Cow position:
               
chr11:63919869-63920170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
319-637
               

               
Cow position:
               
chr11:3740161-3739831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 150
               

               
Conread position:
               
319-640
               

               
Cow position:
               
chr11:81167836-81168157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
319-650
               

               
Cow position:
               
chr11:7460431-7460750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
319-650
               

               
Cow position:
               
chr11:27907968-27907658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
319-650
               

               
Cow position:
               
chr11:68913340-68913007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 248
               

               
Conread position:
               
319-654
               

               
Cow position:
               
chr11:40395635-40395298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
319-654
               

               
Cow position:
               
chr11:42067061-42066721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 0
               

               
Conread position:
               
319-654
               

               
Cow position:
               
chr11:69978162-69977838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
319-655
               

               
Cow position:
               
chr11:33824717-33825031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
249, 79
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr11:23271810-23272142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr11:23407654-23407319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
241, 11
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr11:36194487-36194151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
196, 13
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr11:44032203-44031860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 45
               

               
Conread position:
               
319-657
               

               
Cow position:
               
chr11:74316902-74316570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 14
               

               
Conread position:
               
319-665
               

               
Cow position:
               
chr11:75479829-75480180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
71, 11
               

               
Conread position:
               
319-671
               

               
Cow position:
               
chr11:3175868-3175534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
319-671
               

               
Cow position:
               
chr11:31413655-31413296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
319-671
               

               
Cow position:
               
chr11:67804944-67804595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
60, 14
               

               
Conread position:
               
319-672
               

               
Cow position:
               
chr11:7874335-7873990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
71, 21
               

               
Conread position:
               
319-672
               

               
Cow position:
               
chr11:45435275-45434929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
319-673
               

               
Cow position:
               
chr11:18699067-18698719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 71
               

               
Conread position:
               
319-673
               

               
Cow position:
               
chr11:55053061-55052728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
319-673
               

               
Cow position:
               
chr11:76890235-76889890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
71, 14
               

               
Conread position:
               
319-676
               

               
Cow position:
               
chr11:15285426-15285776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 64
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:13500209-13499850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
21, 79
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:15504309-15503941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:17278486-17278828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
25, 48
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:21893947-21894316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
14, 190
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:42016442-42016798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
71, 34
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:45619549-45619187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:55334116-55333749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
71, 251
               

               
Conread position:
               
319-677
               

               
Cow position:
               
chr11:81300422-81300772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 130
               

               
Conread position:
               
320-473
               

               
Cow position:
               
chr11:6784398-6784251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
320-486
               

               
Cow position:
               
chr11:17369722-17369560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
320-497
               

               
Cow position:
               
chr11:63484136-63483961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
320-497
               

               
Cow position:
               
chr11:80400043-80399867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
70, 80
               

               
Conread position:
               
320-502
               

               
Cow position:
               
chr11:63849752-63849938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
320-508
               

               
Cow position:
               
chr11:5176187-5176369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
320-514
               

               
Cow position:
               
chr11:31326213-31326008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
320-518
               

               
Cow position:
               
chr11:6319938-6320135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
320-525
               

               
Cow position:
               
chr11:6094206-6094412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
320-530
               

               
Cow position:
               
chr11:905188-905397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
320-536
               

               
Cow position:
               
chr11:56115133-56114918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 71
               

               
Conread position:
               
320-547
               

               
Cow position:
               
chr11:3896502-3896730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 198
               

               
Conread position:
               
320-560
               

               
Cow position:
               
chr11:37424951-37425186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 124
               

               
Conread position:
               
320-562
               

               
Cow position:
               
chr11:71934750-71935001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 147
               

               
Conread position:
               
320-583
               

               
Cow position:
               
chr11:17721605-17721870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
320-608
               

               
Cow position:
               
chr11:8437493-8437783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
320-648
               

               
Cow position:
               
chr11:62742454-62742766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
270, 16
               

               
Conread position:
               
320-650
               

               
Cow position:
               
chr11:23251403-23251727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
320-650
               

               
Cow position:
               
chr11:30721294-30720962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
320-656
               

               
Cow position:
               
chr11:81134972-81135306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
320-664
               

               
Cow position:
               
chr11:84228528-84228864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
97, 12
               

               
Conread position:
               
320-670
               

               
Cow position:
               
chr11:42884588-42884933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
18, 132
               

               
Conread position:
               
320-671
               

               
Cow position:
               
chr11:2874595-2874232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 10
               

               
Conread position:
               
320-672
               

               
Cow position:
               
chr11:26066996-26067341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
96, 13
               

               
Conread position:
               
320-673
               

               
Cow position:
               
chr11:11647293-11646911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 191
               

               
Conread position:
               
320-673
               

               
Cow position:
               
chr11:52297028-52297379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
320-677
               

               
Cow position:
               
chr11:34963261-34962898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
228, 29
               

               
Conread position:
               
320-677
               

               
Cow position:
               
chr11:65762389-65762762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
321-500
               

               
Cow position:
               
chr11:63201451-63201269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
81, 73
               

               
Conread position:
               
321-503
               

               
Cow position:
               
chr11:11483517-11483325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 184
               

               
Conread position:
               
321-503
               

               
Cow position:
               
chr11:37042168-37041984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
95, 12
               

               
Conread position:
               
321-517
               

               
Cow position:
               
chr11:30322300-30322494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
79, 12
               

               
Conread position:
               
321-519
               

               
Cow position:
               
chr11:71814897-71814704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
321-543
               

               
Cow position:
               
chr11:47784976-47784747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
17, 134
               

               
Conread position:
               
321-559
               

               
Cow position:
               
chr11:43914489-43914250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 226
               

               
Conread position:
               
321-560
               

               
Cow position:
               
chr11:63866466-63866703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 69
               

               
Conread position:
               
321-561
               

               
Cow position:
               
chr11:18915205-18914980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
217, 69
               

               
Conread position:
               
321-562
               

               
Cow position:
               
chr11:34644847-34644609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
321-614
               

               
Cow position:
               
chr11:53817049-53816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
69, 11
               

               
Conread position:
               
321-649
               

               
Cow position:
               
chr11:35980946-35981278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
321-653
               

               
Cow position:
               
chr11:52690329-52690661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
321-654
               

               
Cow position:
               
chr11:67615059-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 10
               

               
Conread position:
               
321-655
               

               
Cow position:
               
chr11:76369334-76369661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
321-657
               

               
Cow position:
               
chr11:32254021-32254361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 129
               

               
Conread position:
               
321-665
               

               
Cow position:
               
chr11:17227458-17227797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 16
               

               
Conread position:
               
321-671
               

               
Cow position:
               
chr11:13592931-13592580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
321-672
               

               
Cow position:
               
chr11:36182886-36182529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 57
               

               
Conread position:
               
321-672
               

               
Cow position:
               
chr11:78380874-78381212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
321-676
               

               
Cow position:
               
chr11:19500609-19500941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
344, 69
               

               
Conread position:
               
322-491
               

               
Cow position:
               
chr11:57170413-57170576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr11:18777399-18777584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 179
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr11:33369347-33369165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
322-501
               

               
Cow position:
               
chr11:54872567-54872745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
135, 73
               

               
Conread position:
               
322-505
               

               
Cow position:
               
chr11:30485852-30485662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
322-525
               

               
Cow position:
               
chr11:21830019-21830219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
68, 11
               

               
Conread position:
               
322-536
               

               
Cow position:
               
chr11:17517595-17517378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
322-559
               

               
Cow position:
               
chr11:28078685-28078460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
16, 75
               

               
Conread position:
               
322-562
               

               
Cow position:
               
chr11:3715018-3714779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
19, 196
               

               
Conread position:
               
322-595
               

               
Cow position:
               
chr11:62812758-62813032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
322-598
               

               
Cow position:
               
chr11:33409073-33409344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
263, 15
               

               
Conread position:
               
322-671
               

               
Cow position:
               
chr11:36286897-36286539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
322-671
               

               
Cow position:
               
chr11:38639292-38638964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
322-671
               

               
Cow position:
               
chr11:44223075-44222734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
322-672
               

               
Cow position:
               
chr11:63433872-63434213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
322-673
               

               
Cow position:
               
chr11:26535978-26535620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
122, 88
               

               
Conread position:
               
322-677
               

               
Cow position:
               
chr11:1380875-1380519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
11, 248
               

               
Conread position:
               
322-677
               

               
Cow position:
               
chr11:17859959-17860317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
96, 133
               

               
Conread position:
               
322-677
               

               
Cow position:
               
chr11:18508832-18509181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
7, 231
               

               
Conread position:
               
323-673
               

               
Cow position:
               
chr11:68909659-68910009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
22, 128
               

               
Conread position:
               
323-677
               

               
Cow position:
               
chr11:22977687-22978027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 44
               

               
Conread position:
               
323-677
               

               
Cow position:
               
chr11:45283121-45282765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
324-486
               

               
Cow position:
               
chr11:9691201-9691034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
324-486
               

               
Cow position:
               
chr11:81928320-81928478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
324-496
               

               
Cow position:
               
chr11:71192162-71191990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 9
               

               
Conread position:
               
324-546
               

               
Cow position:
               
chr11:69417597-69417373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
16, 185
               

               
Conread position:
               
324-562
               

               
Cow position:
               
chr11:41437992-41438233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
324-618
               

               
Cow position:
               
chr11:17083119-17083414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
324-656
               

               
Cow position:
               
chr11:48429312-48428964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
324-677
               

               
Cow position:
               
chr11:8544829-8545175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
95, 9
               

               
Conread position:
               
324-677
               

               
Cow position:
               
chr11:8988038-8988390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
82, 47
               

               
Conread position:
               
325-529
               

               
Cow position:
               
chr11:30986827-30986628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 75
               

               
Conread position:
               
325-544
               

               
Cow position:
               
chr11:51195906-51196110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
325-562
               

               
Cow position:
               
chr11:18924938-18924699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 75
               

               
Conread position:
               
325-677
               

               
Cow position:
               
chr11:50152622-50152978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
326-530
               

               
Cow position:
               
chr11:63478551-63478363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
326-546
               

               
Cow position:
               
chr11:46427218-46427438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
326-561
               

               
Cow position:
               
chr11:4225277-4225052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
326-561
               

               
Cow position:
               
chr11:77013960-77013739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
326-575
               

               
Cow position:
               
chr11:30964533-30964285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
89, 69
               

               
Conread position:
               
326-650
               

               
Cow position:
               
chr11:39462811-39462494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 76
               

               
Conread position:
               
326-676
               

               
Cow position:
               
chr11:30830433-30830777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 39
               

               
Conread position:
               
326-677
               

               
Cow position:
               
chr11:21728099-21728431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 30
               

               
Conread position:
               
327-485
               

               
Cow position:
               
chr11:65431705-65431549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
327-583
               

               
Cow position:
               
chr11:47725079-47724837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
327-650
               

               
Cow position:
               
chr11:62789316-62788993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 73
               

               
Conread position:
               
327-655
               

               
Cow position:
               
chr11:32054995-32055325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
327-676
               

               
Cow position:
               
chr11:45646408-45646756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
327-677
               

               
Cow position:
               
chr11:4207500-4207150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
328-486
               

               
Cow position:
               
chr11:73638042-73637884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 9
               

               
Conread position:
               
328-534
               

               
Cow position:
               
chr11:46784651-46784456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
328-563
               

               
Cow position:
               
chr11:35669778-35669999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
328-650
               

               
Cow position:
               
chr11:43360599-43360917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
242, 67
               

               
Conread position:
               
328-664
               

               
Cow position:
               
chr11:70251102-70250775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
328-671
               

               
Cow position:
               
chr11:258986-259329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
328-671
               

               
Cow position:
               
chr11:42291652-42291989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
328-673
               

               
Cow position:
               
chr11:13061066-13061388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
111, 56
               

               
Conread position:
               
328-673
               

               
Cow position:
               
chr11:34646784-34646433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 261
               

               
Conread position:
               
328-677
               

               
Cow position:
               
chr11:30192366-30192010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 39
               

               
Conread position:
               
328-677
               

               
Cow position:
               
chr11:46746824-46746466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
95, 82
               

               
Conread position:
               
328-677
               

               
Cow position:
               
chr11:65607501-65607853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
328-677
               

               
Cow position:
               
chr11:70483663-70484021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 72
               

               
Conread position:
               
329-471
               

               
Cow position:
               
chr11:32586939-32587079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
329-472
               

               
Cow position:
               
chr11:63977242-63977101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
329-487
               

               
Cow position:
               
chr11:4653073-4653226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
329-501
               

               
Cow position:
               
chr11:15591293-15591460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 66
               

               
Conread position:
               
329-503
               

               
Cow position:
               
chr11:74839790-74839623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
329-504
               

               
Cow position:
               
chr11:68570194-68570369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
64, 47
               

               
Conread position:
               
329-507
               

               
Cow position:
               
chr11:80296672-80296844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
329-521
               

               
Cow position:
               
chr11:66685723-66685911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
155, 86
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr11:9699068-9699259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
329-530
               

               
Cow position:
               
chr11:15607802-15607986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
329-532
               

               
Cow position:
               
chr11:77241890-77241688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
9, 66
               

               
Conread position:
               
329-533
               

               
Cow position:
               
chr11:2484609-2484813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
99, 28
               

               
Conread position:
               
329-535
               

               
Cow position:
               
chr11:85186341-85186547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
329-545
               

               
Cow position:
               
chr11:17638331-17638564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
329-556
               

               
Cow position:
               
chr11:71111086-71110851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
329-560
               

               
Cow position:
               
chr11:897851-897629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
329-561
               

               
Cow position:
               
chr11:1067250-1067485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
329-561
               

               
Cow position:
               
chr11:62811485-62811252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 122
               

               
Conread position:
               
329-575
               

               
Cow position:
               
chr11:30867364-30867125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
329-583
               

               
Cow position:
               
chr11:4636986-4637239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
329-598
               

               
Cow position:
               
chr11:29699500-29699780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
61, 201
               

               
Conread position:
               
329-617
               

               
Cow position:
               
chr11:80412822-80413114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
58, 199
               

               
Conread position:
               
329-638
               

               
Cow position:
               
chr11:45276960-45277269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
329-640
               

               
Cow position:
               
chr11:47837506-47837188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
61, 36
               

               
Conread position:
               
329-643
               

               
Cow position:
               
chr11:30708692-30708376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 139
               

               
Conread position:
               
329-644
               

               
Cow position:
               
chr11:49872699-49873017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 167
               

               
Conread position:
               
329-670
               

               
Cow position:
               
chr11:35212983-35213316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
329-670
               

               
Cow position:
               
chr11:41549151-41549491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
329-671
               

               
Cow position:
               
chr11:49153128-49152795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 67
               

               
Conread position:
               
329-672
               

               
Cow position:
               
chr11:72375479-72375843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
61, 254
               

               
Conread position:
               
329-673
               

               
Cow position:
               
chr11:49149233-49148878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 87
               

               
Conread position:
               
329-673
               

               
Cow position:
               
chr11:52380685-52381032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 342
               

               
Conread position:
               
329-676
               

               
Cow position:
               
chr11:15017245-15016880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
329-676
               

               
Cow position:
               
chr11:15339244-15338913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:41357-41021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 66
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:11125852-11125500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 35
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:11558355-11558005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 26
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:20238863-20238509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 69
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:20762039-20761684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 164
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:25620203-25620559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
61, 210
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:27404884-27405228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 139
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:40818446-40818802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 17
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:62239928-62239584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:75874584-75874914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 67
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:83043180-83043526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 66
               

               
Conread position:
               
329-677
               

               
Cow position:
               
chr11:85723881-85723537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
330-511
               

               
Cow position:
               
chr11:74152563-74152750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
330-522
               

               
Cow position:
               
chr11:80586451-80586268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
330-530
               

               
Cow position:
               
chr11:41576687-41576882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
330-561
               

               
Cow position:
               
chr11:32398827-32398593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
60, 132
               

               
Conread position:
               
330-640
               

               
Cow position:
               
chr11:27719153-27719448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
330-644
               

               
Cow position:
               
chr11:41293618-41293948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 254
               

               
Conread position:
               
330-672
               

               
Cow position:
               
chr11:17321853-17321503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
330-677
               

               
Cow position:
               
chr11:1625036-1625380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
64, 72
               

               
Conread position:
               
330-677
               

               
Cow position:
               
chr11:9270552-9270890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 40
               

               
Conread position:
               
330-677
               

               
Cow position:
               
chr11:80556404-80556058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
331-482
               

               
Cow position:
               
chr11:12768581-12768432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
331-577
               

               
Cow position:
               
chr11:7560187-7559937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
331-676
               

               
Cow position:
               
chr11:27248674-27248331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 65
               

               
Conread position:
               
332-501
               

               
Cow position:
               
chr11:30857219-30857052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
118, 63
               

               
Conread position:
               
332-506
               

               
Cow position:
               
chr11:13684537-13684701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
332-524
               

               
Cow position:
               
chr11:22884590-22884405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
332-557
               

               
Cow position:
               
chr11:21886014-21885792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
332-562
               

               
Cow position:
               
chr11:80639368-80639596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
182, 46
               

               
Conread position:
               
332-564
               

               
Cow position:
               
chr11:15382311-15382551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
332-629
               

               
Cow position:
               
chr11:6423214-6423517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 68
               

               
Conread position:
               
332-666
               

               
Cow position:
               
chr11:32126800-32126460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
58, 104
               

               
Conread position:
               
332-672
               

               
Cow position:
               
chr11:55494848-55494522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 39
               

               
Conread position:
               
332-673
               

               
Cow position:
               
chr11:38236429-38236085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
112, 44
               

               
Conread position:
               
332-676
               

               
Cow position:
               
chr11:10992442-10992119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
143, 19
               

               
Conread position:
               
332-677
               

               
Cow position:
               
chr11:41215917-41215579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
332-677
               

               
Cow position:
               
chr11:62620560-62620221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
333-528
               

               
Cow position:
               
chr11:25604136-25603935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
333-529
               

               
Cow position:
               
chr11:1980082-1980281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
333-531
               

               
Cow position:
               
chr11:36092736-36092932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
86, 60
               

               
Conread position:
               
333-542
               

               
Cow position:
               
chr11:30842842-30843045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
333-546
               

               
Cow position:
               
chr11:32260714-32260504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
333-558
               

               
Cow position:
               
chr11:71345132-71345366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
333-563
               

               
Cow position:
               
chr11:30172482-30172262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
333-580
               

               
Cow position:
               
chr11:1932305-1932556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
333-611
               

               
Cow position:
               
chr11:17676192-17676467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 77
               

               
Conread position:
               
333-620
               

               
Cow position:
               
chr11:30494171-30493893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
252, 31
               

               
Conread position:
               
333-629
               

               
Cow position:
               
chr11:29960475-29960181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
333-634
               

               
Cow position:
               
chr11:375642-375335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
333-640
               

               
Cow position:
               
chr11:83032860-83032558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 62
               

               
Conread position:
               
333-641
               

               
Cow position:
               
chr11:13940370-13940065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
67, 182
               

               
Conread position:
               
333-645
               

               
Cow position:
               
chr11:67614742-67615059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 62
               

               
Conread position:
               
333-650
               

               
Cow position:
               
chr11:38334704-38334391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
111, 72
               

               
Conread position:
               
333-657
               

               
Cow position:
               
chr11:30165694-30165367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
333-657
               

               
Cow position:
               
chr11:49057566-49057260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 57
               

               
Conread position:
               
333-664
               

               
Cow position:
               
chr11:6233695-6234030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
333-664
               

               
Cow position:
               
chr11:6245504-6245171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
57, 123
               

               
Conread position:
               
333-664
               

               
Cow position:
               
chr11:41985865-41986195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
252, 62
               

               
Conread position:
               
333-672
               

               
Cow position:
               
chr11:1485677-1486025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
333-673
               

               
Cow position:
               
chr11:4662880-4663204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
218, 32
               

               
Conread position:
               
333-673
               

               
Cow position:
               
chr11:48650169-48649821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
42, 130
               

               
Conread position:
               
333-673
               

               
Cow position:
               
chr11:70600644-70600979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr11:30764675-30764321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 205
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr11:35580444-35580096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 62
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr11:37804369-37804716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
61, 284
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr11:66572309-66572663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
57, 177
               

               
Conread position:
               
333-676
               

               
Cow position:
               
chr11:83323760-83323414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
116, 62
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:10095526-10095184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:15632377-15632719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 135
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:18706635-18706978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:26143916-26144261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
230, 59
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:27747101-27746762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 62
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:35153637-35153987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:64044400-64044079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
252, 57
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:65157222-65157574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
333-677
               

               
Cow position:
               
chr11:67600961-67600620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
252, 65
               

               
Conread position:
               
334-653
               

               
Cow position:
               
chr11:48660112-48659793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
227, 65
               

               
Conread position:
               
334-677
               

               
Cow position:
               
chr11:1848983-1849324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
335-489
               

               
Cow position:
               
chr11:36361460-36361616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
335-500
               

               
Cow position:
               
chr11:53486979-53487138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
335-527
               

               
Cow position:
               
chr11:6255828-6256014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 60
               

               
Conread position:
               
335-532
               

               
Cow position:
               
chr11:20234867-20234668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
55, 116
               

               
Conread position:
               
335-573
               

               
Cow position:
               
chr11:38211822-38211589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
335-640
               

               
Cow position:
               
chr11:40608412-40608722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 161
               

               
Conread position:
               
336-514
               

               
Cow position:
               
chr11:9836275-9836455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
336-560
               

               
Cow position:
               
chr11:62889712-62889938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
337-559
               

               
Cow position:
               
chr11:78820328-78820111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
337-560
               

               
Cow position:
               
chr11:39619871-39620083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
337-560
               

               
Cow position:
               
chr11:41313483-41313701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
337-562
               

               
Cow position:
               
chr11:4199453-4199225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
53, 125
               

               
Conread position:
               
337-576
               

               
Cow position:
               
chr11:42159883-42160114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 32
               

               
Conread position:
               
337-593
               

               
Cow position:
               
chr11:11533756-11534007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
228, 38
               

               
Conread position:
               
337-622
               

               
Cow position:
               
chr11:6194567-6194300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
337-622
               

               
Cow position:
               
chr11:46999165-46998877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 186
               

               
Conread position:
               
337-650
               

               
Cow position:
               
chr11:55744648-55744342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 229
               

               
Conread position:
               
337-672
               

               
Cow position:
               
chr11:51729453-51729131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 53
               

               
Conread position:
               
337-673
               

               
Cow position:
               
chr11:21843960-21844291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 124
               

               
Conread position:
               
337-677
               

               
Cow position:
               
chr11:30209644-30209983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 31
               

               
Conread position:
               
337-677
               

               
Cow position:
               
chr11:30638773-30639108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
309, 60
               

               
Conread position:
               
338-607
               

               
Cow position:
               
chr11:80564475-80564200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 106
               

               
Conread position:
               
338-677
               

               
Cow position:
               
chr11:87155699-87155355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
52, 174
               

               
Conread position:
               
339-484
               

               
Cow position:
               
chr11:85985872-85986018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 61
               

               
Conread position:
               
339-584
               

               
Cow position:
               
chr11:48248023-48248283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 233
               

               
Conread position:
               
339-627
               

               
Cow position:
               
chr11:17036355-17036642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 52
               

               
Conread position:
               
339-629
               

               
Cow position:
               
chr11:55762033-55761756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
339-676
               

               
Cow position:
               
chr11:14470538-14470208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
246, 56
               

               
Conread position:
               
339-677
               

               
Cow position:
               
chr11:45872132-45872482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
7, 89
               

               
Conread position:
               
341-646
               

               
Cow position:
               
chr11:77705925-77705624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
341-670
               

               
Cow position:
               
chr11:56187789-56187464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
341-676
               

               
Cow position:
               
chr11:13042973-13043307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
244, 54
               

               
Conread position:
               
341-677
               

               
Cow position:
               
chr11:2907359-2907681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
342-508
               

               
Cow position:
               
chr11:15278844-15279005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
342-562
               

               
Cow position:
               
chr11:35109366-35109584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 22
               

               
Conread position:
               
343-536
               

               
Cow position:
               
chr11:49207884-49207691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 148
               

               
Conread position:
               
344-520
               

               
Cow position:
               
chr11:60720282-60720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
344-677
               

               
Cow position:
               
chr11:48474881-48474540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
345-527
               

               
Cow position:
               
chr11:2836031-2835847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
345-558
               

               
Cow position:
               
chr11:34467733-34467529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
345-673
               

               
Cow position:
               
chr11:77319583-77319254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 55
               

               
Conread position:
               
345-677
               

               
Cow position:
               
chr11:8524947-8525273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
345-677
               

               
Cow position:
               
chr11:28993577-28993894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
240, 45
               

               
Conread position:
               
345-677
               

               
Cow position:
               
chr11:42296456-42296780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
345-677
               

               
Cow position:
               
chr11:60301806-60302121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
231, 38
               

               
Conread position:
               
345-677
               

               
Cow position:
               
chr11:73353896-73354217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
306, 50
               

               
Conread position:
               
347-677
               

               
Cow position:
               
chr11:81405998-81406321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
43, 81
               

               
Conread position:
               
348-482
               

               
Cow position:
               
chr11:33289301-33289429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
348-503
               

               
Cow position:
               
chr11:72401567-72401720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
348-557
               

               
Cow position:
               
chr11:44017152-44016933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
348-562
               

               
Cow position:
               
chr11:35926741-35926951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
348-657
               

               
Cow position:
               
chr11:18852071-18851776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
348-670
               

               
Cow position:
               
chr11:63435690-63435362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 154
               

               
Conread position:
               
348-673
               

               
Cow position:
               
chr11:24602142-24601815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
19, 47
               

               
Conread position:
               
348-677
               

               
Cow position:
               
chr11:34144751-34145076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
349-504
               

               
Cow position:
               
chr11:4411705-4411857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
349-654
               

               
Cow position:
               
chr11:11469489-11469775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
349-677
               

               
Cow position:
               
chr11:83066659-83066332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 175
               

               
Conread position:
               
350-606
               

               
Cow position:
               
chr11:18910718-18910964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
350-612
               

               
Cow position:
               
chr11:24599232-24599487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
221, 14
               

               
Conread position:
               
350-654
               

               
Cow position:
               
chr11:47772216-47772531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 281
               

               
Conread position:
               
353-656
               

               
Cow position:
               
chr11:18243781-18244080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
356-672
               

               
Cow position:
               
chr11:39499515-39499201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 54
               

               
Conread position:
               
356-677
               

               
Cow position:
               
chr11:7924432-7924749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 27
               

               
Conread position:
               
357-578
               

               
Cow position:
               
chr11:62609763-62609549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
361-677
               

               
Cow position:
               
chr11:17493638-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
367-667
               

               
Cow position:
               
chr11:69076056-69075756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
367-677
               

               
Cow position:
               
chr11:23137910-23138224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
83, 46
               

               
Conread position:
               
370-642
               

               
Cow position:
               
chr11:83033092-83033363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
371-677
               

               
Cow position:
               
chr11:8840601-8840900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
384-677
               

               
Cow position:
               
chr11:61958613-61958909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
176, 63
               

               
Conread position:
               
385-510
               

               
Cow position:
               
chr11:434744-434870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
121, 62
               

               
Conread position:
               
385-557
               

               
Cow position:
               
chr11:4430006-4430174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
385-662
               

               
Cow position:
               
chr11:64351663-64351942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
178, 10
               

               
Conread position:
               
385-672
               

               
Cow position:
               
chr11:62150763-62151042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 109
               

               
Conread position:
               
386-673
               

               
Cow position:
               
chr11:44642168-44642445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
164, 23
               

               
Conread position:
               
388-514
               

               
Cow position:
               
chr11:4436875-4436749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
388-516
               

               
Cow position:
               
chr11:70513715-70513587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
388-517
               

               
Cow position:
               
chr11:37982452-37982579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
388-546
               

               
Cow position:
               
chr11:47882932-47882773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
388-557
               

               
Cow position:
               
chr11:83579051-83579219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
132, 21
               

               
Conread position:
               
388-562
               

               
Cow position:
               
chr11:70826076-70825902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
388-563
               

               
Cow position:
               
chr11:56290639-56290464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
388-577
               

               
Cow position:
               
chr11:82730870-82731060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
388-583
               

               
Cow position:
               
chr11:19606706-19606512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 177
               

               
Conread position:
               
388-655
               

               
Cow position:
               
chr11:6633838-6633571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
183, 205
               

               
Conread position:
               
388-655
               

               
Cow position:
               
chr11:44575625-44575875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
388-656
               

               
Cow position:
               
chr11:70277986-70278250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
261, 15
               

               
Conread position:
               
388-671
               

               
Cow position:
               
chr11:25387199-25386907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
388-672
               

               
Cow position:
               
chr11:17831095-17831376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
168, 32
               

               
Conread position:
               
388-677
               

               
Cow position:
               
chr11:36849043-36848764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
56, 38
               

               
Conread position:
               
388-677
               

               
Cow position:
               
chr11:38577651-38577936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
193, 105
               

               
Conread position:
               
388-677
               

               
Cow position:
               
chr11:40478724-40479017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
18, 169
               

               
Conread position:
               
388-677
               

               
Cow position:
               
chr11:73924433-73924722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 116
               

               
Conread position:
               
389-504
               

               
Cow position:
               
chr11:56895849-56895963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
389-536
               

               
Cow position:
               
chr11:84775200-84775054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
389-677
               

               
Cow position:
               
chr11:59702616-59702324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
390-566
               

               
Cow position:
               
chr11:5249405-5249577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
391-530
               

               
Cow position:
               
chr11:74720848-74720710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
391-677
               

               
Cow position:
               
chr11:48272325-48272035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
393-568
               

               
Cow position:
               
chr11:30888157-30888335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 119
               

               
Conread position:
               
393-568
               

               
Cow position:
               
chr11:34692978-34692801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
393-677
               

               
Cow position:
               
chr11:83230276-83230553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 127
               

               
Conread position:
               
395-677
               

               
Cow position:
               
chr11:69119415-69119140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 196
               

               
Conread position:
               
397-673
               

               
Cow position:
               
chr11:33753791-33754063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
399-639
               

               
Cow position:
               
chr11:6194323-6194081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
399-645
               

               
Cow position:
               
chr11:64867909-64868145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
399-676
               

               
Cow position:
               
chr11:5582-5306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 158
               

               
Conread position:
               
399-677
               

               
Cow position:
               
chr11:30955119-30954836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 167
               

               
Conread position:
               
401-536
               

               
Cow position:
               
chr11:64058230-64058364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
401-618
               

               
Cow position:
               
chr11:32690856-32691067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
165, 147
               

               
Conread position:
               
402-582
               

               
Cow position:
               
chr11:3790954-3790770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
402-635
               

               
Cow position:
               
chr11:249366-249605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
403-677
               

               
Cow position:
               
chr11:62155749-62155462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
153, 7
               

               
Conread position:
               
405-638
               

               
Cow position:
               
chr11:33345556-33345320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
405-673
               

               
Cow position:
               
chr11:1070980-1071250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 246
               

               
Conread position:
               
405-673
               

               
Cow position:
               
chr11:2092438-2092181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
407-673
               

               
Cow position:
               
chr11:2575793-2576062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
15, 159
               

               
Conread position:
               
408-673
               

               
Cow position:
               
chr11:15373947-15373693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
408-673
               

               
Cow position:
               
chr11:85294349-85294088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 140
               

               
Conread position:
               
408-677
               

               
Cow position:
               
chr11:43898246-43897978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 110
               

               
Conread position:
               
411-536
               

               
Cow position:
               
chr11:15682875-15683000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-550
               

               
Cow position:
               
chr11:58173729-58173591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
411-562
               

               
Cow position:
               
chr11:27565435-27565287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
15, 22
               

               
Conread position:
               
411-576
               

               
Cow position:
               
chr11:22747226-22747387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
112, 94
               

               
Conread position:
               
411-583
               

               
Cow position:
               
chr11:35803241-35803068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
411-583
               

               
Cow position:
               
chr11:79018954-79019126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-625
               

               
Cow position:
               
chr11:26845490-26845705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
174, 21
               

               
Conread position:
               
411-638
               

               
Cow position:
               
chr11:54334433-54334210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
411-655
               

               
Cow position:
               
chr11:70836272-70836511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
411-666
               

               
Cow position:
               
chr11:4652868-4653127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
160, 202
               

               
Conread position:
               
411-667
               

               
Cow position:
               
chr11:28644192-28643933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 153
               

               
Conread position:
               
411-670
               

               
Cow position:
               
chr11:47004450-47004193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
158, 31
               

               
Conread position:
               
411-672
               

               
Cow position:
               
chr11:36658719-36658975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
168, 21
               

               
Conread position:
               
411-673
               

               
Cow position:
               
chr11:32693380-32693630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
238, 36
               

               
Conread position:
               
411-673
               

               
Cow position:
               
chr11:64048507-64048260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
248, 9
               

               
Conread position:
               
411-673
               

               
Cow position:
               
chr11:71492757-71493016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
182, 95
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:3283128-3282889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:3393105-3393371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 63
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:7590293-7590031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:33311082-33310807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
67, 134
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:44636650-44636920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
411-677
               

               
Cow position:
               
chr11:63847949-63847687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
254, 21
               

               
Conread position:
               
412-525
               

               
Cow position:
               
chr11:34238467-34238580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
412-540
               

               
Cow position:
               
chr11:84764136-84764012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
412-562
               

               
Cow position:
               
chr11:36920470-36920624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
412-562
               

               
Cow position:
               
chr11:62376370-62376519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
412-651
               

               
Cow position:
               
chr11:261164-261399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
412-671
               

               
Cow position:
               
chr11:3234179-3233927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
234, 152
               

               
Conread position:
               
412-673
               

               
Cow position:
               
chr11:82940521-82940780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
412-676
               

               
Cow position:
               
chr11:56518207-56518471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 34
               

               
Conread position:
               
412-677
               

               
Cow position:
               
chr11:377537-377808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 144
               

               
Conread position:
               
412-677
               

               
Cow position:
               
chr11:36112522-36112259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
181, 13
               

               
Conread position:
               
412-677
               

               
Cow position:
               
chr11:41811811-41812072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
234, 147
               

               
Conread position:
               
412-677
               

               
Cow position:
               
chr11:44234459-44234191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 222
               

               
Conread position:
               
412-677
               

               
Cow position:
               
chr11:66424776-66425050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
413-673
               

               
Cow position:
               
chr11:17661186-17660936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
413-677
               

               
Cow position:
               
chr11:1157746-1157482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
235, 89
               

               
Conread position:
               
413-677
               

               
Cow position:
               
chr11:8147795-8148059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 137
               

               
Conread position:
               
413-677
               

               
Cow position:
               
chr11:47545239-47544968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 90
               

               
Conread position:
               
414-504
               

               
Cow position:
               
chr11:58228717-58228627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
414-561
               

               
Cow position:
               
chr11:34413238-34413385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
414-594
               

               
Cow position:
               
chr11:31410776-31410963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
414-637
               

               
Cow position:
               
chr11:31506950-31506722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
164, 6
               

               
Conread position:
               
414-676
               

               
Cow position:
               
chr11:64089996-64090245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
245, 18
               

               
Conread position:
               
414-677
               

               
Cow position:
               
chr11:16342125-16342402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 249
               

               
Conread position:
               
414-677
               

               
Cow position:
               
chr11:62226091-62225824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
14, 191
               

               
Conread position:
               
415-631
               

               
Cow position:
               
chr11:35573391-35573607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
29, 46
               

               
Conread position:
               
415-672
               

               
Cow position:
               
chr11:83687333-83687588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 195
               

               
Conread position:
               
415-676
               

               
Cow position:
               
chr11:31525979-31525705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
415-677
               

               
Cow position:
               
chr11:952367-952109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
415-677
               

               
Cow position:
               
chr11:30925255-30924987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
129, 36
               

               
Conread position:
               
415-677
               

               
Cow position:
               
chr11:36799207-36799465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
231, 32
               

               
Conread position:
               
416-541
               

               
Cow position:
               
chr11:9698998-9698877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
416-546
               

               
Cow position:
               
chr11:58938645-58938775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
416-559
               

               
Cow position:
               
chr11:81931017-81931155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 32
               

               
Conread position:
               
416-569
               

               
Cow position:
               
chr11:81762967-81762809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
416-648
               

               
Cow position:
               
chr11:71807467-71807704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
416-650
               

               
Cow position:
               
chr11:83926142-83925915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
416-653
               

               
Cow position:
               
chr11:8428609-8428363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:6202543-6202288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 141
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:10213471-10213720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:30934516-30934265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
226, 89
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:36238877-36238625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
243, 74
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:40573236-40573492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
155, 68
               

               
Conread position:
               
416-673
               

               
Cow position:
               
chr11:45631666-45631920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
170, 99
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:1362368-1362640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
148, 249
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:11232359-11232617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 10
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:33414336-33414069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:34032099-34032365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:35684401-35684657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 145
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:42359219-42358957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
31, 145
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:67747379-67747122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
169, 31
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:68206742-68207001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
78, 124
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:68904978-68905236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:71009224-71008973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
416-677
               

               
Cow position:
               
chr11:76114742-76114492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
417-522
               

               
Cow position:
               
chr11:25320284-25320179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
106
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
417-619
               

               
Cow position:
               
chr11:40792606-40792812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
417-650
               

               
Cow position:
               
chr11:18086249-18086469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
417-650
               

               
Cow position:
               
chr11:46953046-46952814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
229, 164
               

               
Conread position:
               
417-650
               

               
Cow position:
               
chr11:80761279-80761514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
417-657
               

               
Cow position:
               
chr11:20602325-20602085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
417-677
               

               
Cow position:
               
chr11:16906952-16907205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 77
               

               
Conread position:
               
417-677
               

               
Cow position:
               
chr11:58588443-58588185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
184, 60
               

               
Conread position:
               
417-677
               

               
Cow position:
               
chr11:63482332-63482589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
417-677
               

               
Cow position:
               
chr11:70086431-70086162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
152, 56
               

               
Conread position:
               
418-562
               

               
Cow position:
               
chr11:57491386-57491526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
418-650
               

               
Cow position:
               
chr11:71868505-71868739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
167, 152
               

               
Conread position:
               
418-655
               

               
Cow position:
               
chr11:79960687-79960929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
418-672
               

               
Cow position:
               
chr11:13075714-13075948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
418-672
               

               
Cow position:
               
chr11:23128442-23128700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
418-672
               

               
Cow position:
               
chr11:82107804-82108050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
142, 60
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:9221634-9221886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
160, 98
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:18572898-18572639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
167, 98
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:23586736-23586475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:26483803-26483551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
224, 14
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:34113363-34113103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 132
               

               
Conread position:
               
418-677
               

               
Cow position:
               
chr11:41809395-41809637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
228, 145
               

               
Conread position:
               
419-626
               

               
Cow position:
               
chr11:18587499-18587719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
419-664
               

               
Cow position:
               
chr11:23232423-23232665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
93, 53
               

               
Conread position:
               
419-673
               

               
Cow position:
               
chr11:80530455-80530207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
232, 69
               

               
Conread position:
               
419-677
               

               
Cow position:
               
chr11:29946817-29947090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
129, 246
               

               
Conread position:
               
420-541
               

               
Cow position:
               
chr11:3248611-3248731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
420-562
               

               
Cow position:
               
chr11:16842892-16843030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
420-562
               

               
Cow position:
               
chr11:84977262-84977405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
420-615
               

               
Cow position:
               
chr11:22499271-22499464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 72
               

               
Conread position:
               
420-656
               

               
Cow position:
               
chr11:65767295-65767056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
420-665
               

               
Cow position:
               
chr11:59873024-59872780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
51, 69
               

               
Conread position:
               
420-673
               

               
Cow position:
               
chr11:35775433-35775180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
148, 120
               

               
Conread position:
               
420-673
               

               
Cow position:
               
chr11:41272233-41271983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
136, 107
               

               
Conread position:
               
420-673
               

               
Cow position:
               
chr11:71501037-71501294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
165, 12
               

               
Conread position:
               
420-676
               

               
Cow position:
               
chr11:64905093-64904835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
40, 31
               

               
Conread position:
               
420-677
               

               
Cow position:
               
chr11:5031680-5031937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
226, 86
               

               
Conread position:
               
420-677
               

               
Cow position:
               
chr11:16232839-16233098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 177
               

               
Conread position:
               
420-677
               

               
Cow position:
               
chr11:34121294-34121038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
40, 22
               

               
Conread position:
               
421-535
               

               
Cow position:
               
chr11:8107538-8107425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
421-637
               

               
Cow position:
               
chr11:14466392-14466610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 149
               

               
Conread position:
               
421-650
               

               
Cow position:
               
chr11:40258317-40258543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
421-675
               

               
Cow position:
               
chr11:21852207-21852464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
140, 196
               

               
Conread position:
               
421-677
               

               
Cow position:
               
chr11:76606767-76606521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
422-612
               

               
Cow position:
               
chr11:64406322-64406128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
157, 138
               

               
Conread position:
               
422-673
               

               
Cow position:
               
chr11:70609891-70609627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
93, 59
               

               
Conread position:
               
422-677
               

               
Cow position:
               
chr11:42083562-42083315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
242, 83
               

               
Conread position:
               
422-677
               

               
Cow position:
               
chr11:50778461-50778211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
163, 115
               

               
Conread position:
               
423-547
               

               
Cow position:
               
chr11:65803777-65803902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
423-652
               

               
Cow position:
               
chr11:39118850-39118616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 230
               

               
Conread position:
               
423-657
               

               
Cow position:
               
chr11:67246878-67246650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
162, 72
               

               
Conread position:
               
423-673
               

               
Cow position:
               
chr11:52983767-52983517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
162, 9
               

               
Conread position:
               
425-531
               

               
Cow position:
               
chr11:62372864-62372759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
425-672
               

               
Cow position:
               
chr11:53553306-53553079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
425-677
               

               
Cow position:
               
chr11:35873912-35874154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 0
               

               
Conread position:
               
425-677
               

               
Cow position:
               
chr11:69810994-69810744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 177
               

               
Conread position:
               
426-583
               

               
Cow position:
               
chr11:10363297-10363454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
426-595
               

               
Cow position:
               
chr11:28168333-28168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
144, 126
               

               
Conread position:
               
426-655
               

               
Cow position:
               
chr11:71168503-71168725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
159, 15
               

               
Conread position:
               
426-673
               

               
Cow position:
               
chr11:33341055-33341304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 120
               

               
Conread position:
               
426-677
               

               
Cow position:
               
chr11:44036809-44036556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
159, 67
               

               
Conread position:
               
426-677
               

               
Cow position:
               
chr11:45897959-45898215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
426-677
               

               
Cow position:
               
chr11:47899358-47899117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
426-677
               

               
Cow position:
               
chr11:63469965-63469717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
153, 140
               

               
Conread position:
               
427-558
               

               
Cow position:
               
chr11:16801868-16801994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
427-573
               

               
Cow position:
               
chr11:76822000-76822142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
427-672
               

               
Cow position:
               
chr11:48496504-48496744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
88, 140
               

               
Conread position:
               
427-677
               

               
Cow position:
               
chr11:34829697-34829942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
428-570
               

               
Cow position:
               
chr11:35246509-35246367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
57, 25
               

               
Conread position:
               
428-650
               

               
Cow position:
               
chr11:80537574-80537351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
149, 14
               

               
Conread position:
               
428-656
               

               
Cow position:
               
chr11:48306259-48306485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
163, 144
               

               
Conread position:
               
428-672
               

               
Cow position:
               
chr11:49934643-49934893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
147, 241
               

               
Conread position:
               
428-672
               

               
Cow position:
               
chr11:81162345-81162590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
161, 205
               

               
Conread position:
               
428-676
               

               
Cow position:
               
chr11:3833276-3833513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
428-677
               

               
Cow position:
               
chr11:21438296-21438053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
428-677
               

               
Cow position:
               
chr11:36987037-36986802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
191, 115
               

               
Conread position:
               
428-677
               

               
Cow position:
               
chr11:64638438-64638696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
153, 78
               

               
Conread position:
               
429-583
               

               
Cow position:
               
chr11:30484006-30483851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
429-583
               

               
Cow position:
               
chr11:53279628-53279780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
142, 70
               

               
Conread position:
               
429-676
               

               
Cow position:
               
chr11:22931889-22932136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
431-635
               

               
Cow position:
               
chr11:84490415-84490610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
434-559
               

               
Cow position:
               
chr11:36328953-36329078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
435-676
               

               
Cow position:
               
chr11:2509225-2509462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 131
               

               
Conread position:
               
435-677
               

               
Cow position:
               
chr11:32378266-32378024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
125, 21
               

               
Conread position:
               
436-677
               

               
Cow position:
               
chr11:51144793-51144555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
95, 140
               

               
Conread position:
               
439-676
               

               
Cow position:
               
chr11:62880555-62880789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
147, 57
               

               
Conread position:
               
446-546
               

               
Cow position:
               
chr11:42452865-42452963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
6, 49
               

               
Conread position:
               
446-677
               

               
Cow position:
               
chr11:24937735-24937502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 203
               

               
Conread position:
               
446-677
               

               
Cow position:
               
chr11:57724755-57724988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 113
               

               
Conread position:
               
447-622
               

               
Cow position:
               
chr11:75965583-75965757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
447-643
               

               
Cow position:
               
chr11:69392631-69392428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
447-655
               

               
Cow position:
               
chr11:70273375-70273165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
141, 127
               

               
Conread position:
               
447-676
               

               
Cow position:
               
chr11:10620259-10620484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
62, 124
               

               
Conread position:
               
447-676
               

               
Cow position:
               
chr11:60143233-60143460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
204, 39
               

               
Conread position:
               
447-677
               

               
Cow position:
               
chr11:30911935-30912152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
447-677
               

               
Cow position:
               
chr11:41175880-41176112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 127
               

               
Conread position:
               
447-677
               

               
Cow position:
               
chr11:67550309-67550535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
138, 101
               

               
Conread position:
               
448-620
               

               
Cow position:
               
chr11:11044965-11045139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 59
               

               
Conread position:
               
453-673
               

               
Cow position:
               
chr11:38874339-38874562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
135, 114
               

               
Conread position:
               
455-655
               

               
Cow position:
               
chr11:16261964-16262166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
100, 193
               

               
Conread position:
               
456-640
               

               
Cow position:
               
chr11:42002888-42003069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
139, 78
               

               
Conread position:
               
456-650
               

               
Cow position:
               
chr11:7497587-7497778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
69, 79
               

               
Conread position:
               
456-677
               

               
Cow position:
               
chr11:48697504-48697284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
458-595
               

               
Cow position:
               
chr11:54218772-54218636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
127, 102
               

               
Conread position:
               
458-650
               

               
Cow position:
               
chr11:31337445-31337247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
458-656
               

               
Cow position:
               
chr11:53463000-53462801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 114
               

               
Conread position:
               
458-676
               

               
Cow position:
               
chr11:33349643-33349860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
115, 108
               

               
Conread position:
               
458-676
               

               
Cow position:
               
chr11:70114530-70114308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 172
               

               
Conread position:
               
461-646
               

               
Cow position:
               
chr11:21497577-21497390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
124, 102
               

               
Conread position:
               
461-673
               

               
Cow position:
               
chr11:9463890-9463673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
461-677
               

               
Cow position:
               
chr11:18340986-18341198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
463-677
               

               
Cow position:
               
chr11:30120609-30120828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
464-588
               

               
Cow position:
               
chr11:13029214-13029335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
466-671
               

               
Cow position:
               
chr11:30597043-30596830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
466-673
               

               
Cow position:
               
chr11:61427644-61427448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
467-650
               

               
Cow position:
               
chr11:4732391-4732207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 102
               

               
Conread position:
               
467-664
               

               
Cow position:
               
chr11:3726337-3726135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
467-675
               

               
Cow position:
               
chr11:4323407-4323195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
467-675
               

               
Cow position:
               
chr11:81282006-81281787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 206
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr11:20684523-20684739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
112, 99
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr11:33286908-33287115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
106, 99
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr11:36981612-36981402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
106, 99
               

               
Conread position:
               
467-677
               

               
Cow position:
               
chr11:56728998-56728787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 70
               

               
Conread position:
               
469-677
               

               
Cow position:
               
chr11:13191281-13191060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
469-677
               

               
Cow position:
               
chr11:33293732-33293950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 198
               

               
Conread position:
               
471-645
               

               
Cow position:
               
chr11:485584-485761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 110
               

               
Conread position:
               
473-643
               

               
Cow position:
               
chr11:83000487-83000663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 6
               

               
Conread position:
               
475-677
               

               
Cow position:
               
chr11:42792932-42793135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
110, 79
               

               
Conread position:
               
476-677
               

               
Cow position:
               
chr11:2811690-2811891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
109, 94
               

               
Conread position:
               
477-671
               

               
Cow position:
               
chr11:57170791-57170986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
93, 179
               

               
Conread position:
               
477-673
               

               
Cow position:
               
chr11:955407-955207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
477-673
               

               
Cow position:
               
chr11:14094381-14094581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
96, 176
               

               
Conread position:
               
478-615
               

               
Cow position:
               
chr11:37369718-37369579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
478-677
               

               
Cow position:
               
chr11:56348985-56349178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
173, 54
               

               
Conread position:
               
479-676
               

               
Cow position:
               
chr11:65431091-65430899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
479-677
               

               
Cow position:
               
chr11:8339369-8339568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 96
               

               
Conread position:
               
479-677
               

               
Cow position:
               
chr11:27386302-27386508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
479-677
               

               
Cow position:
               
chr11:36114193-36113995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
480-676
               

               
Cow position:
               
chr11:18591398-18591593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
91, 101
               

               
Conread position:
               
483-677
               

               
Cow position:
               
chr11:85986140-85986333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
103, 5
               

               
Conread position:
               
484-672
               

               
Cow position:
               
chr11:21427961-21428151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
484-673
               

               
Cow position:
               
chr11:6154440-6154256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
493-667
               

               
Cow position:
               
chr11:75918356-75918190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr11:8936472-8936647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 18
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr11:16251224-16251409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
496-677
               

               
Cow position:
               
chr11:83196517-83196336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
504-677
               

               
Cow position:
               
chr11:4412010-4412177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
508-673
               

               
Cow position:
               
chr11:25320063-25319895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
510-671
               

               
Cow position:
               
chr11:59155871-59156035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr11:63516823-63516664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
520-677
               

               
Cow position:
               
chr11:71455788-71455628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
534-677
               

               
Cow position:
               
chr11:43914197-43914049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
538-673
               

               
Cow position:
               
chr11:47851004-47850868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
569-677
               

               
Cow position:
               
chr11:25165390-25165280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 5
               
Show alignments to all cow chromosomes.