Cow genome map
| Conread name: | Liv1-LVRM1D040208 |
| Conread position: | 1-620 |
| Cow position: | chr1:46836812-46837428 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 390 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 1-628 |
| Cow position: | chr1:49972991-49972358 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 397 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 4-620 |
| Cow position: | chr1:72984676-72985253 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 390 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 4-620 |
| Cow position: | chr1:82922958-82922360 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 401 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 77-620 |
| Cow position: | chr1:50942015-50941492 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 80 |
| Conread position: | 203-620 |
| Cow position: | chr1:93855896-93856316 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 203-628 |
| Cow position: | chr1:30533643-30533207 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 206-620 |
| Cow position: | chr1:55777969-55778390 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 206-620 |
| Cow position: | chr1:63604391-63603967 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 206-620 |
| Cow position: | chr1:65387696-65388116 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 206-627 |
| Cow position: | chr1:26584480-26584910 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 206-628 |
| Cow position: | chr1:57364963-57364528 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 206-628 |
| Cow position: | chr1:91891739-91891306 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 207-620 |
| Cow position: | chr1:88132157-88132580 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 276 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 210-620 |
| Cow position: | chr1:94661058-94661473 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 224-629 |
| Cow position: | chr1:40643619-40644033 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 227-620 |
| Cow position: | chr1:69404406-69404804 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 227-628 |
| Cow position: | chr1:85779048-85778636 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 230-620 |
| Cow position: | chr1:12060801-12060403 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 242-629 |
| Cow position: | chr1:91597307-91596899 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 30, 237 |
| Conread position: | 261-620 |
| Cow position: | chr1:17035163-17034791 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 69, 46 |
| Conread position: | 267-615 |
| Cow position: | chr1:69416845-69416496 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 71, 158 |
| Conread position: | 267-620 |
| Cow position: | chr1:17011299-17010934 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:20830331-20830698 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 341 |
| Conread position: | 267-620 |
| Cow position: | chr1:29363731-29364099 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:40056540-40056908 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:50210406-50210038 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:80357738-80357366 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:81288571-81288939 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 205 |
| Conread position: | 267-620 |
| Cow position: | chr1:82477412-82477780 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-620 |
| Cow position: | chr1:82565549-82565917 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-628 |
| Cow position: | chr1:10724017-10724393 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 267-628 |
| Cow position: | chr1:76750537-76750157 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 267-629 |
| Cow position: | chr1:64481185-64480825 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 267-630 |
| Cow position: | chr1:83975727-83976096 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 271-620 |
| Cow position: | chr1:59207639-59207275 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 271-620 |
| Cow position: | chr1:86546697-86546333 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 271-633 |
| Cow position: | chr1:30223122-30223489 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 272-567 |
| Cow position: | chr1:40231746-40231444 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 49 |
| Conread position: | 272-629 |
| Cow position: | chr1:55320631-55320277 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 53, 185 |
| Conread position: | 273-629 |
| Cow position: | chr1:34507867-34508222 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 277-620 |
| Cow position: | chr1:13581543-13581192 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 162 |
| Conread position: | 277-625 |
| Cow position: | chr1:51084473-51084109 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 221 |
| Conread position: | 279-630 |
| Cow position: | chr1:53563459-53563808 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 286-620 |
| Cow position: | chr1:57135874-57136210 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 291-570 |
| Cow position: | chr1:23262796-23262514 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 95, 39 |
| Conread position: | 291-618 |
| Cow position: | chr1:99315682-99316009 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 291-620 |
| Cow position: | chr1:48248372-48248707 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 25, 170 |
| Conread position: | 291-634 |
| Cow position: | chr1:71740681-71740325 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 291-654 |
| Cow position: | chr1:71443065-71443408 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 212, 44 |
| Conread position: | 292-616 |
| Cow position: | chr1:99219071-99218744 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 113, 62 |
| Conread position: | 292-628 |
| Cow position: | chr1:91900482-91900837 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 300-570 |
| Cow position: | chr1:87849157-87849425 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 34 |
| Conread position: | 300-620 |
| Cow position: | chr1:22725026-22724709 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 195, 45 |
| Conread position: | 325-635 |
| Cow position: | chr1:53518579-53518891 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 385-630 |
| Cow position: | chr1:42259549-42259299 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 11, 160 |
| Conread position: | 388-630 |
| Cow position: | chr1:20788993-20789240 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 169 |
| Conread position: | 403-620 |
| Cow position: | chr1:62921145-62921363 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 408-630 |
| Cow position: | chr1:85824078-85824303 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 154 |
| Conread position: | 408-633 |
| Cow position: | chr1:29607473-29607248 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 95, 215 |
| Conread position: | 409-626 |
| Cow position: | chr1:44256247-44256459 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 409-633 |
| Cow position: | chr1:58115718-58115496 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 108 |
| Conread position: | 410-629 |
| Cow position: | chr1:6769099-6769319 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 86, 173 |
| Conread position: | 413-620 |
| Cow position: | chr1:82911233-82911025 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 418-630 |
| Cow position: | chr1:57696351-57696138 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 420-620 |
| Cow position: | chr1:101012581-101012380 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 164 |
| Conread position: | 423-627 |
| Cow position: | chr1:18964763-18964554 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 441-630 |
| Cow position: | chr1:72093264-72093079 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 108 |
Show alignments to all cow chromosomes.