Cow genome map
| Conread name: | Liv1-LVRM1D040208 |
| Conread position: | 1-239 |
| Cow position: | chr11:35504353-35504113 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 1-554 |
| Cow position: | chr11:11988985-11989529 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 1-575 |
| Cow position: | chr11:10848303-10848871 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 375 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 1-614 |
| Cow position: | chr11:41169841-41169233 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 406 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 1-620 |
| Cow position: | chr11:43513778-43513163 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 390 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 1-623 |
| Cow position: | chr11:35264728-35265325 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 390 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 38 |
| Conread position: | 3-603 |
| Cow position: | chr11:50026893-50026299 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 397 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 30, 154 |
| Conread position: | 4-620 |
| Cow position: | chr11:23880885-23881487 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 31-629 |
| Cow position: | chr11:63275516-63274942 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 387 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 201-583 |
| Cow position: | chr11:9302405-9302009 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 203-620 |
| Cow position: | chr11:24394355-24394779 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 206-620 |
| Cow position: | chr11:58135436-58135854 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 206-628 |
| Cow position: | chr11:72309996-72309563 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 218-631 |
| Cow position: | chr11:4191597-4192007 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 146, 28 |
| Conread position: | 223-550 |
| Cow position: | chr11:30208197-30208524 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 224-626 |
| Cow position: | chr11:40581450-40581855 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 231-629 |
| Cow position: | chr11:3104387-3103973 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 122 |
| Conread position: | 236-620 |
| Cow position: | chr11:27668924-27668529 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 88, 19 |
| Conread position: | 267-620 |
| Cow position: | chr11:3494087-3494455 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr11:38834350-38833982 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 201 |
| Conread position: | 267-620 |
| Cow position: | chr11:44517766-44517400 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr11:47738442-47738082 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr11:53430933-53430567 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 210 |
| Conread position: | 267-620 |
| Cow position: | chr11:67845472-67845106 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 267-628 |
| Cow position: | chr11:32452926-32453308 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 267-629 |
| Cow position: | chr11:17106584-17106208 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 61, 351 |
| Conread position: | 267-629 |
| Cow position: | chr11:17547261-17547632 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 267-629 |
| Cow position: | chr11:63654236-63653856 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 255 |
| Conread position: | 267-660 |
| Cow position: | chr11:15943266-15942876 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 58, 110 |
| Conread position: | 268-620 |
| Cow position: | chr11:9733578-9733217 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 271-578 |
| Cow position: | chr11:13524764-13524468 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 226, 38 |
| Conread position: | 271-626 |
| Cow position: | chr11:54254548-54254915 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 92, 147 |
| Conread position: | 271-630 |
| Cow position: | chr11:63163843-63163481 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 157, 42 |
| Conread position: | 272-625 |
| Cow position: | chr11:10883398-10883757 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 275-619 |
| Cow position: | chr11:13048659-13048303 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 276-620 |
| Cow position: | chr11:28740205-28739843 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 277-630 |
| Cow position: | chr11:16484645-16484977 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 218, 53 |
| Conread position: | 283-629 |
| Cow position: | chr11:12387539-12387889 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 285-628 |
| Cow position: | chr11:31927271-31927627 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 346 |
| Conread position: | 291-620 |
| Cow position: | chr11:30253351-30253689 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 59 |
| Conread position: | 291-626 |
| Cow position: | chr11:58401633-58401980 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 292-628 |
| Cow position: | chr11:19062954-19062600 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 293-620 |
| Cow position: | chr11:26784380-26784715 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 103, 72 |
| Conread position: | 311-627 |
| Cow position: | chr11:21475263-21475593 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 321-629 |
| Cow position: | chr11:54467319-54467619 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 391-625 |
| Cow position: | chr11:73461903-73461668 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 395-620 |
| Cow position: | chr11:32079548-32079322 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 404-625 |
| Cow position: | chr11:64963303-64963524 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 408-573 |
| Cow position: | chr11:35135227-35135386 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 408-575 |
| Cow position: | chr11:54483738-54483571 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-620 |
| Cow position: | chr11:20575023-20574813 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 166, 92 |
| Conread position: | 408-630 |
| Cow position: | chr11:36087487-36087266 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 413-620 |
| Cow position: | chr11:86876626-86876418 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 413-628 |
| Cow position: | chr11:61399847-61399628 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 418-655 |
| Cow position: | chr11:85652968-85653204 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 124 |
| Conread position: | 422-620 |
| Cow position: | chr11:4062643-4062447 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 127 |
| Conread position: | 423-608 |
| Cow position: | chr11:24484472-24484657 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 96 |
| Conread position: | 424-625 |
| Cow position: | chr11:76577538-76577742 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 202 |
| Conread position: | 436-620 |
| Cow position: | chr11:47728411-47728226 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.