Cow genome map
| Conread name: | Liv1-LVRM1D040208 |
| Conread position: | 1-620 |
| Cow position: | chr16:7676004-7675394 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 389 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 1-620 |
| Cow position: | chr16:25342412-25343034 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 390 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 1-620 |
| Cow position: | chr16:40295720-40295103 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 388 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 2-619 |
| Cow position: | chr16:46500645-46501263 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 3-620 |
| Cow position: | chr16:2410514-2409870 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 407 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 21, 126 |
| Conread position: | 4-620 |
| Cow position: | chr16:837774-838376 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 386 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 4-620 |
| Cow position: | chr16:43896817-43896198 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 391 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 30, 64 |
| Conread position: | 13-396 |
| Cow position: | chr16:52562439-52562799 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 22-619 |
| Cow position: | chr16:3330413-3330993 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 389 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 31-239 |
| Cow position: | chr16:38023808-38024019 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 141, 121 |
| Conread position: | 31-620 |
| Cow position: | chr16:12668295-12667715 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 31-628 |
| Cow position: | chr16:15185557-15186153 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 391 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 36-616 |
| Cow position: | chr16:15048008-15047427 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 372 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 48, 192 |
| Conread position: | 40-553 |
| Cow position: | chr16:39366415-39365879 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 129, 78 |
| Conread position: | 123-620 |
| Cow position: | chr16:34530849-34531351 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 30 |
| Conread position: | 201-620 |
| Cow position: | chr16:1566818-1566400 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 202-630 |
| Cow position: | chr16:27299513-27299076 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 203-619 |
| Cow position: | chr16:23535249-23534838 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 162, 15 |
| Conread position: | 203-620 |
| Cow position: | chr16:8815464-8815044 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 203-620 |
| Cow position: | chr16:27732745-27732318 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 278 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 206-620 |
| Cow position: | chr16:1432830-1433248 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 206-620 |
| Cow position: | chr16:2726572-2726151 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 207-620 |
| Cow position: | chr16:29047666-29048086 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 208-568 |
| Cow position: | chr16:32773911-32773552 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 230-620 |
| Cow position: | chr16:5485394-5485787 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 100, 16 |
| Conread position: | 267-571 |
| Cow position: | chr16:10568344-10568645 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 267-619 |
| Cow position: | chr16:19778953-19778589 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr16:27594203-27594571 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 201 |
| Conread position: | 267-625 |
| Cow position: | chr16:32883409-32883042 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 98, 57 |
| Conread position: | 271-626 |
| Cow position: | chr16:32930818-32931161 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 277-617 |
| Cow position: | chr16:707556-707202 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 277-620 |
| Cow position: | chr16:2238058-2237707 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 265 |
| Conread position: | 277-620 |
| Cow position: | chr16:5527679-5527322 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 244 |
| Conread position: | 285-568 |
| Cow position: | chr16:42175595-42175882 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 42, 160 |
| Conread position: | 290-612 |
| Cow position: | chr16:337908-338241 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 291-618 |
| Cow position: | chr16:14665093-14664751 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 291-620 |
| Cow position: | chr16:49221184-49220854 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 291-626 |
| Cow position: | chr16:42240447-42240786 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 303-625 |
| Cow position: | chr16:42055272-42055596 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 385-625 |
| Cow position: | chr16:24764731-24764487 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 390-619 |
| Cow position: | chr16:40654733-40654960 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 402-620 |
| Cow position: | chr16:43846369-43846153 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 403-573 |
| Cow position: | chr16:46628829-46629001 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 403-620 |
| Cow position: | chr16:5119173-5118955 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 403-630 |
| Cow position: | chr16:27823402-27823177 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 90, 107 |
| Conread position: | 405-620 |
| Cow position: | chr16:7465452-7465668 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 406-630 |
| Cow position: | chr16:8665236-8665011 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 408-620 |
| Cow position: | chr16:3828489-3828277 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 185, 98 |
| Conread position: | 408-633 |
| Cow position: | chr16:42869764-42869541 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 410-573 |
| Cow position: | chr16:25938378-25938541 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-620 |
| Cow position: | chr16:20193316-20193108 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 416-630 |
| Cow position: | chr16:42060115-42059898 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 48 |
Show alignments to all cow chromosomes.