Cow genome map
| Conread name: | Liv1-LVRM1D040208 |
| Conread position: | 1-619 |
| Cow position: | chr3:64016306-64015706 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 386 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 110 |
| Conread position: | 1-620 |
| Cow position: | chr3:53516668-53517287 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 1-620 |
| Cow position: | chr3:56100617-56100010 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 392 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 4-619 |
| Cow position: | chr3:36877589-36876983 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 382 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 4-620 |
| Cow position: | chr3:57483660-57483048 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 390 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 136 |
| Conread position: | 13-620 |
| Cow position: | chr3:21181620-21181020 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 394 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 11, 155 |
| Conread position: | 22-566 |
| Cow position: | chr3:53412215-53412752 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 359 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 31-620 |
| Cow position: | chr3:5993990-5993410 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 198, 79 |
| Conread position: | 31-620 |
| Cow position: | chr3:45975594-45976177 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 363 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 31-628 |
| Cow position: | chr3:19720581-19719972 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 377 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 238, 89 |
| Conread position: | 31-628 |
| Cow position: | chr3:19939988-19940615 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 32-397 |
| Cow position: | chr3:25783536-25783193 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 196-620 |
| Cow position: | chr3:6687027-6687465 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 203-620 |
| Cow position: | chr3:2709616-2709192 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 203-620 |
| Cow position: | chr3:30315800-30316225 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 203-620 |
| Cow position: | chr3:40824643-40825070 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 203-620 |
| Cow position: | chr3:72631317-72631734 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 203-620 |
| Cow position: | chr3:78026162-78025744 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 206-620 |
| Cow position: | chr3:595391-595804 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 206-621 |
| Cow position: | chr3:48058107-48057682 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 206-628 |
| Cow position: | chr3:5952927-5952498 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 286 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 207-620 |
| Cow position: | chr3:23289079-23288656 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 220-620 |
| Cow position: | chr3:19755685-19755286 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 12 |
| Conread position: | 237-620 |
| Cow position: | chr3:16224165-16224563 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 255-625 |
| Cow position: | chr3:79122301-79121926 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 267-620 |
| Cow position: | chr3:1742641-1743009 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr3:2368027-2367661 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 265 |
| Conread position: | 267-620 |
| Cow position: | chr3:2870098-2870466 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr3:2918779-2919142 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr3:4287399-4287764 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-620 |
| Cow position: | chr3:24644534-24644891 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 130, 36 |
| Conread position: | 267-620 |
| Cow position: | chr3:29575814-29575446 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 267-620 |
| Cow position: | chr3:64651947-64652286 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 230, 67 |
| Conread position: | 267-620 |
| Cow position: | chr3:68698663-68698297 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 272 |
| Conread position: | 267-620 |
| Cow position: | chr3:68891260-68890899 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 85 |
| Conread position: | 267-624 |
| Cow position: | chr3:82638405-82638773 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 101, 54 |
| Conread position: | 267-628 |
| Cow position: | chr3:3524325-3524700 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 267-628 |
| Cow position: | chr3:6783677-6784054 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-628 |
| Cow position: | chr3:37970356-37970734 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-628 |
| Cow position: | chr3:44925372-44925752 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 256 |
| Conread position: | 271-620 |
| Cow position: | chr3:7313160-7312799 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 55, 103 |
| Conread position: | 271-629 |
| Cow position: | chr3:19799858-19799492 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 272-620 |
| Cow position: | chr3:34506029-34505675 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 277-620 |
| Cow position: | chr3:3840197-3839840 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 231 |
| Conread position: | 277-620 |
| Cow position: | chr3:24457865-24457503 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 277-620 |
| Cow position: | chr3:45034059-45034417 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 277-632 |
| Cow position: | chr3:62503445-62503813 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 254 |
| Conread position: | 278-522 |
| Cow position: | chr3:65207900-65207643 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 285-620 |
| Cow position: | chr3:54291251-54290904 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 60 |
| Conread position: | 291-620 |
| Cow position: | chr3:36863124-36862780 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 291-620 |
| Cow position: | chr3:56295520-56295863 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 294-619 |
| Cow position: | chr3:19945581-19945927 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 321-630 |
| Cow position: | chr3:45983060-45982743 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 228 |
| Conread position: | 328-627 |
| Cow position: | chr3:70197593-70197911 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 281 |
| Conread position: | 346-630 |
| Cow position: | chr3:63946535-63946818 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 351-575 |
| Cow position: | chr3:42053273-42053046 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 361-627 |
| Cow position: | chr3:57979000-57978737 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 392-630 |
| Cow position: | chr3:71205876-71206114 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 395-615 |
| Cow position: | chr3:31319813-31320029 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 73 |
| Conread position: | 395-626 |
| Cow position: | chr3:23944085-23943854 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 399-620 |
| Cow position: | chr3:58784700-58784478 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 403-620 |
| Cow position: | chr3:21028158-21027940 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 94, 150 |
| Conread position: | 403-620 |
| Cow position: | chr3:43191832-43191614 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 403-620 |
| Cow position: | chr3:51857231-51857013 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 84, 88 |
| Conread position: | 403-629 |
| Cow position: | chr3:8438500-8438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 150 |
| Conread position: | 408-630 |
| Cow position: | chr3:58167140-58167363 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 408-630 |
| Cow position: | chr3:69099375-69099156 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 408-630 |
| Cow position: | chr3:78908522-78908302 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 413-620 |
| Cow position: | chr3:20382506-20382713 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 422-553 |
| Cow position: | chr3:12689194-12689060 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 114 |
| Conread position: | 422-628 |
| Cow position: | chr3:4736447-4736242 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 106 |
Show alignments to all cow chromosomes.