Cow genome map
| Conread name: | Liv1-LVRM1D040208 |
| Conread position: | 1-628 |
| Cow position: | chr6:34891013-34890398 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 409 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 3-625 |
| Cow position: | chr6:33108344-33107735 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 400 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 31, 109 |
| Conread position: | 4-625 |
| Cow position: | chr6:51731194-51731807 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 393 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 143 |
| Conread position: | 13-620 |
| Cow position: | chr6:58601605-58602201 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 383 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 31-620 |
| Cow position: | chr6:914775-915353 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 127-523 |
| Cow position: | chr6:31301550-31301937 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 201, 28 |
| Conread position: | 142-628 |
| Cow position: | chr6:28490340-28489837 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 165-620 |
| Cow position: | chr6:24240670-24241126 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 165, 7 |
| Conread position: | 187-620 |
| Cow position: | chr6:703492-703933 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 199-619 |
| Cow position: | chr6:11723902-11723478 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 203-620 |
| Cow position: | chr6:50309-49884 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 203-620 |
| Cow position: | chr6:15139879-15139452 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 206-620 |
| Cow position: | chr6:1535275-1534861 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 206-621 |
| Cow position: | chr6:41228742-41229166 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 206-628 |
| Cow position: | chr6:1821322-1820896 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 124, 12 |
| Conread position: | 215-620 |
| Cow position: | chr6:21835876-21835477 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 156, 31 |
| Conread position: | 217-620 |
| Cow position: | chr6:21973981-21974391 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 219-620 |
| Cow position: | chr6:40866009-40865605 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 227-619 |
| Cow position: | chr6:184221-183822 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 98, 19 |
| Conread position: | 256-620 |
| Cow position: | chr6:27528670-27528298 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 32 |
| Conread position: | 266-626 |
| Cow position: | chr6:42441735-42442099 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 55 |
| Conread position: | 267-603 |
| Cow position: | chr6:47047827-47047476 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-619 |
| Cow position: | chr6:43619077-43619444 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 201 |
| Conread position: | 267-620 |
| Cow position: | chr6:3150588-3150957 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 267-620 |
| Cow position: | chr6:12664966-12664599 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 267-620 |
| Cow position: | chr6:26669508-26669141 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 66, 180 |
| Conread position: | 267-620 |
| Cow position: | chr6:27170934-27171301 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 69, 201 |
| Conread position: | 267-620 |
| Cow position: | chr6:28187466-28187117 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 267-620 |
| Cow position: | chr6:36528566-36528919 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 267-620 |
| Cow position: | chr6:40276437-40276804 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 267-620 |
| Cow position: | chr6:40379277-40378910 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 61, 238 |
| Conread position: | 267-620 |
| Cow position: | chr6:44002027-44002393 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 292 |
| Conread position: | 267-620 |
| Cow position: | chr6:45587305-45587669 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 61, 138 |
| Conread position: | 267-628 |
| Cow position: | chr6:7139987-7139608 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 267-628 |
| Cow position: | chr6:28703356-28702977 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 267-628 |
| Cow position: | chr6:39910692-39911061 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 70 |
| Conread position: | 267-633 |
| Cow position: | chr6:2376038-2376409 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 103, 69 |
| Conread position: | 271-620 |
| Cow position: | chr6:15891838-15891482 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 267 |
| Conread position: | 271-620 |
| Cow position: | chr6:35939372-35939721 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 79, 49 |
| Conread position: | 271-620 |
| Cow position: | chr6:44262116-44261758 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 271-621 |
| Cow position: | chr6:40326775-40327141 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 271-629 |
| Cow position: | chr6:3571952-3572325 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 280-630 |
| Cow position: | chr6:63465556-63465201 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 291-620 |
| Cow position: | chr6:330086-329744 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 191 |
| Conread position: | 327-630 |
| Cow position: | chr6:34058506-34058197 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 327-634 |
| Cow position: | chr6:16515991-16516304 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 335-630 |
| Cow position: | chr6:48420154-48419858 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 403-620 |
| Cow position: | chr6:14390432-14390650 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 409-616 |
| Cow position: | chr6:29406813-29406610 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 147, 91 |
| Conread position: | 410-619 |
| Cow position: | chr6:57471178-57471388 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 422-620 |
| Cow position: | chr6:59502886-59503082 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 75, 131 |
| Conread position: | 423-620 |
| Cow position: | chr6:32345919-32345725 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 61 |
Show alignments to all cow chromosomes.