Cow genome map

Conread name: Liv1-LVRM1D040208

Conread position: 1-617
Cow position: chrX:19726051-19725445 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 399
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 77

Conread position: 1-620
Cow position: chrX:18952737-18952119 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 397
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 97

Conread position: 1-620
Cow position: chrX:23455071-23454461 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 402
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 18, 12

Conread position: 1-628
Cow position: chrX:21643959-21643347 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 395
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 12

Conread position: 4-631
Cow position: chrX:15126277-15125661 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 408
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 30, 92

Conread position: 9-620
Cow position: chrX:321420-322023 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 387
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 90

Conread position: 13-259
Cow position: chrX:25430332-25430092 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 11, 122

Conread position: 13-620
Cow position: chrX:27593030-27592432 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 383
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 86

Conread position: 144-599
Cow position: chrX:23318816-23318361 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 302
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 11

Conread position: 200-548
Cow position: chrX:25071351-25071015 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 163, 27

Conread position: 203-607
Cow position: chrX:2481499-2481088 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 264
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 44

Conread position: 203-619
Cow position: chrX:23389387-23388979 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 270
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 15, 44

Conread position: 203-620
Cow position: chrX:21753302-21752884 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 261
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 44

Conread position: 203-620
Cow position: chrX:23278152-23278581 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 283
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 15, 44

Conread position: 203-620
Cow position: chrX:26529099-26529522 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 272
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 44

Conread position: 206-620
Cow position: chrX:971910-972336 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 134, 12

Conread position: 207-620
Cow position: chrX:16700836-16701249 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 269
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 131, 12

Conread position: 230-620
Cow position: chrX:21580644-21581043 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 103, 17

Conread position: 267-619
Cow position: chrX:674014-673650 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 63, 332

Conread position: 267-620
Cow position: chrX:2577615-2577980 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 237
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 60, 230

Conread position: 267-620
Cow position: chrX:3374718-3374351 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 10

Conread position: 267-620
Cow position: chrX:3467454-3467089 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 229
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:5282589-5282227 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 233
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 15

Conread position: 267-620
Cow position: chrX:5393657-5393289 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 237
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:7753098-7753457 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 320

Conread position: 267-620
Cow position: chrX:11148144-11147775 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 267-620
Cow position: chrX:11423061-11423429 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 236
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:12653316-12652947 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 239
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:13075505-13075145 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 227
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 61, 106

Conread position: 267-620
Cow position: chrX:13096068-13095706 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 227
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 61, 106

Conread position: 267-620
Cow position: chrX:13447635-13447268 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 24

Conread position: 267-620
Cow position: chrX:15979767-15979401 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 272

Conread position: 267-620
Cow position: chrX:16848685-16848333 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 242
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 96, 69

Conread position: 267-620
Cow position: chrX:17477232-17476862 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 240
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 61, 212

Conread position: 267-620
Cow position: chrX:17666603-17666240 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 239
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 69, 24

Conread position: 267-620
Cow position: chrX:18452171-18452539 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:20035210-20034843 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 235
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 61, 231

Conread position: 267-620
Cow position: chrX:20333371-20333002 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 241
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:26398936-26398568 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 237
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:28757454-28757086 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:30201547-30201179 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 267-620
Cow position: chrX:35531045-35531413 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 237
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 0

Conread position: 267-625
Cow position: chrX:30729101-30728758 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 234
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 119, 48

Conread position: 267-626
Cow position: chrX:18841819-18841437 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 257
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 54, 209

Conread position: 267-627
Cow position: chrX:30012189-30012567 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 267-628
Cow position: chrX:14460707-14461074 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 236
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 61, 41

Conread position: 267-628
Cow position: chrX:14596037-14596413 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 243
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 66, 0

Conread position: 267-628
Cow position: chrX:37957865-37957486 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 61, 238

Conread position: 267-632
Cow position: chrX:16405808-16406169 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 248
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 118

Conread position: 267-636
Cow position: chrX:15600338-15600722 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 67, 42

Conread position: 271-570
Cow position: chrX:34448722-34449025 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 155

Conread position: 271-620
Cow position: chrX:3083943-3083580 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 234
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 0

Conread position: 271-620
Cow position: chrX:11463853-11463489 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 241
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 271-620
Cow position: chrX:16361926-16361562 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 271-620
Cow position: chrX:24324371-24324007 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 232
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 11

Conread position: 271-620
Cow position: chrX:30436038-30436402 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 271-628
Cow position: chrX:2534876-2534514 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 233
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 122

Conread position: 271-630
Cow position: chrX:24168851-24168488 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 210

Conread position: 272-625
Cow position: chrX:7549521-7549183 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 230
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 11

Conread position: 277-540
Cow position: chrX:6197998-6197731 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 71

Conread position: 277-620
Cow position: chrX:2815283-2814925 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 30

Conread position: 277-620
Cow position: chrX:2858177-2857819 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 232
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 30

Conread position: 278-553
Cow position: chrX:25613259-25613538 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 43

Conread position: 278-620
Cow position: chrX:23328603-23328242 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 54, 83

Conread position: 279-614
Cow position: chrX:40017215-40016882 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 223
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 48, 19

Conread position: 286-629
Cow position: chrX:20184452-20184804 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 245
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 44, 97

Conread position: 290-628
Cow position: chrX:20798520-20798870 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 222
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 290-630
Cow position: chrX:4300970-4300617 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 226
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 48, 34

Conread position: 291-620
Cow position: chrX:37015330-37015674 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 221
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 291-630
Cow position: chrX:17528113-17528466 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 226
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 147

Conread position: 295-620
Cow position: chrX:7094686-7095026 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 223
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 187

Conread position: 324-611
Cow position: chrX:22127890-22127588 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 199
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 53

Conread position: 324-630
Cow position: chrX:43791907-43791591 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 53

Conread position: 377-555
Cow position: chrX:1689247-1689068 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 127

Conread position: 387-620
Cow position: chrX:504888-504653 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 389-630
Cow position: chrX:1012712-1012960 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 78, 110

Conread position: 393-634
Cow position: chrX:16860843-16860610 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 156, 75

Conread position: 395-630
Cow position: chrX:4412189-4412426 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 224, 115

Conread position: 395-630
Cow position: chrX:33584716-33584951 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 79, 72

Conread position: 402-615
Cow position: chrX:24997655-24997450 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 144, 66

Conread position: 402-620
Cow position: chrX:23907463-23907241 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 88, 0

Conread position: 402-625
Cow position: chrX:24953221-24952999 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 153
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 95, 73

Conread position: 402-630
Cow position: chrX:24525339-24525568 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 151

Conread position: 403-620
Cow position: chrX:27084312-27084531 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 149
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 403-625
Cow position: chrX:3622426-3622647 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 149
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 134, 103

Conread position: 403-634
Cow position: chrX:1784905-1785134 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 95, 40

Conread position: 408-628
Cow position: chrX:21316796-21317016 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 36

Conread position: 409-620
Cow position: chrX:36072396-36072184 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 54, 45

Conread position: 410-630
Cow position: chrX:24808214-24807990 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 42

Conread position: 413-620
Cow position: chrX:1942016-1941808 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 133

Conread position: 413-620
Cow position: chrX:10530439-10530232 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 413-620
Cow position: chrX:12354873-12355080 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 140

Conread position: 413-620
Cow position: chrX:21791964-21792172 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 413-620
Cow position: chrX:28664745-28664953 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 413-620
Cow position: chrX:30068492-30068284 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 446-627
Cow position: chrX:5874914-5875095 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 51, 156

Conread position: 461-651
Cow position: chrX:27644473-27644663 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 158, 33

Show alignments to all cow chromosomes.