Cow genome map
| Conread name: | Liv1-LVRM1G030208 | 
| Conread position: | 1-137 | 
| Cow position: | chr6:26764947-26765081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 1-147 | 
| Cow position: | chr6:5330479-5330338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 1-147 | 
| Cow position: | chr6:37463089-37462945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 52, 104 | 
| Conread position: | 1-152 | 
| Cow position: | chr6:54364931-54365085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 1-195 | 
| Cow position: | chr6:23401925-23402109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 1-199 | 
| Cow position: | chr6:38234026-38233834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 1-207 | 
| Cow position: | chr6:20206342-20206146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 1-213 | 
| Cow position: | chr6:60118217-60118010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 1-219 | 
| Cow position: | chr6:38610035-38609826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 140, 60 | 
| Conread position: | 1-223 | 
| Cow position: | chr6:16316380-16316160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 49, 151 | 
| Conread position: | 1-225 | 
| Cow position: | chr6:17313802-17313582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 193, 83 | 
| Conread position: | 1-226 | 
| Cow position: | chr6:9219339-9219124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 1-227 | 
| Cow position: | chr6:49694446-49694225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 59, 0 | 
| Conread position: | 1-228 | 
| Cow position: | chr6:58370825-58370593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 63, 203 | 
| Conread position: | 1-230 | 
| Cow position: | chr6:582205-582421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 223, 59 | 
| Conread position: | 1-237 | 
| Cow position: | chr6:16423769-16423540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 66, 104 | 
| Conread position: | 1-241 | 
| Cow position: | chr6:26450381-26450154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 193, 59 | 
| Conread position: | 1-245 | 
| Cow position: | chr6:9750987-9751207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 1-245 | 
| Cow position: | chr6:16764589-16764809 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 14, 54 | 
| Conread position: | 1-245 | 
| Cow position: | chr6:19013138-19012902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 53, 65 | 
| Conread position: | 1-246 | 
| Cow position: | chr6:59069557-59069796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 55, 64 | 
| Conread position: | 1-247 | 
| Cow position: | chr6:6401021-6400779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 66, 140 | 
| Conread position: | 1-247 | 
| Cow position: | chr6:8787970-8788206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr6:12091926-12092153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 1-247 | 
| Cow position: | chr6:35993651-35993408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 198, 61 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:5113982-5114217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:9839239-9838992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 139, 198 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:15447131-15447378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 55, 157 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:25008785-25008544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 54, 92 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:36652489-36652249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 36, 43 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:52412926-52412684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 191, 26 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:65264475-65264705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 1-248 | 
| Cow position: | chr6:67456785-67456533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 106, 57 | 
| Conread position: | 1-250 | 
| Cow position: | chr6:63298964-63299198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 134, 63 | 
| Conread position: | 1-252 | 
| Cow position: | chr6:17333986-17334231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 1-252 | 
| Cow position: | chr6:28318467-28318234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 13, 53 | 
| Conread position: | 1-264 | 
| Cow position: | chr6:16191745-16191478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 64, 73 | 
| Conread position: | 1-268 | 
| Cow position: | chr6:30974113-30973847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 156, 60 | 
| Conread position: | 1-275 | 
| Cow position: | chr6:445390-445106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 143, 231 | 
| Conread position: | 1-276 | 
| Cow position: | chr6:38641564-38641292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 56, 155 | 
| Conread position: | 1-278 | 
| Cow position: | chr6:54864589-54864874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 42, 160 | 
| Conread position: | 1-279 | 
| Cow position: | chr6:457246-456977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 249, 59 | 
| Conread position: | 1-279 | 
| Cow position: | chr6:47989239-47988981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 196, 57 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:4468835-4468535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 143, 27 | 
| Conread position: | 1-282 | 
| Cow position: | chr6:57405058-57405336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 147, 59 | 
| Conread position: | 1-283 | 
| Cow position: | chr6:21542390-21542107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 63, 145 | 
| Conread position: | 1-283 | 
| Cow position: | chr6:47339289-47339562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 249, 83 | 
| Conread position: | 1-283 | 
| Cow position: | chr6:65871104-65870811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 59, 154 | 
| Conread position: | 1-283 | 
| Cow position: | chr6:67214816-67214529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 49, 83 | 
| Conread position: | 1-286 | 
| Cow position: | chr6:899226-899500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 248, 59 | 
| Conread position: | 1-286 | 
| Cow position: | chr6:23696067-23695782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 59, 152 | 
| Conread position: | 1-286 | 
| Cow position: | chr6:54990934-54991208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 1-286 | 
| Cow position: | chr6:60239328-60239604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 198, 59 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:242869-242597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 249, 54 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:4383546-4383276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 249, 27 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:5445690-5445412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 57, 91 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:6343493-6343209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 100, 58 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:7824833-7824546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 36, 43 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:8562789-8562499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 65, 57 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:9736589-9736856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 228, 59 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:18048957-18049242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 144, 53 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:18988279-18988000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 87, 50 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:24781488-24781780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 100, 60 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:31535502-31535787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 186, 120 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:38207423-38207712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 42 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:40713436-40713716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 248, 60 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:41733693-41733410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 232, 57 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:44099154-44098868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 73, 59 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:54368837-54369116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 249, 57 | 
| Conread position: | 1-287 | 
| Cow position: | chr6:63272544-63272830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 180, 73 | 
| Conread position: | 1-292 | 
| Cow position: | chr6:12338060-12337764 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 61, 156 | 
| Conread position: | 1-292 | 
| Cow position: | chr6:35990169-35990443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 249, 57 | 
| Conread position: | 1-292 | 
| Cow position: | chr6:38614886-38614603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 59, 142 | 
| Conread position: | 1-294 | 
| Cow position: | chr6:36470495-36470786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 150 | 
| Conread position: | 1-294 | 
| Cow position: | chr6:42565755-42565463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 49 | 
| Conread position: | 1-297 | 
| Cow position: | chr6:12551337-12551042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 198, 116 | 
| Conread position: | 1-297 | 
| Cow position: | chr6:26728465-26728754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 120, 32 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:1770131-1770422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 195, 61 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:8318093-8318393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 35, 65 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:15242903-15242609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 22, 66 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:16707082-16706780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 61, 158 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:17557448-17557148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 180, 62 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:34076096-34075797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 183 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:35842725-35842434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 85, 32 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:36928728-36928425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 63, 151 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:50747065-50746754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 54, 157 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:51835466-51835173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 249, 20 | 
| Conread position: | 1-298 | 
| Cow position: | chr6:68049498-68049209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 59 | 
| Conread position: | 1-299 | 
| Cow position: | chr6:54867584-54867283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 57, 151 | 
| Conread position: | 1-301 | 
| Cow position: | chr6:5095475-5095780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 198 | 
| Conread position: | 1-303 | 
| Cow position: | chr6:54490666-54490972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 152, 197 | 
| Conread position: | 1-308 | 
| Cow position: | chr6:53460500-53460810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 59, 150 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:31564270-31564573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 58, 20 | 
| Conread position: | 1-313 | 
| Cow position: | chr6:15300762-15301061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 216, 52 | 
| Conread position: | 1-375 | 
| Cow position: | chr6:60350225-60350607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 66, 56 | 
| Conread position: | 1-379 | 
| Cow position: | chr6:14850647-14851019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 5.00264e-43 | 
| Alignm gaps (pig, cow): | 61, 10 | 
| Conread position: | 1-455 | 
| Cow position: | chr6:47305408-47304980 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 104 | 
| Conread position: | 1-457 | 
| Cow position: | chr6:67968543-67968981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 62, 127 | 
| Conread position: | 1-492 | 
| Cow position: | chr6:642501-642978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 13 | 
| Conread position: | 1-493 | 
| Cow position: | chr6:67951022-67950544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 113 | 
| Conread position: | 1-497 | 
| Cow position: | chr6:28976973-28977439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 99 | 
| Conread position: | 1-498 | 
| Cow position: | chr6:14949414-14949901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 54 | 
| Conread position: | 1-498 | 
| Cow position: | chr6:45064950-45065430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 59 | 
| Conread position: | 1-498 | 
| Cow position: | chr6:66434017-66433528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 120 | 
| Conread position: | 2-146 | 
| Cow position: | chr6:37395335-37395483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 54, 142 | 
| Conread position: | 2-212 | 
| Cow position: | chr6:43134873-43135079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 153, 59 | 
| Conread position: | 2-220 | 
| Cow position: | chr6:19996680-19996477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 201, 25 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:19446319-19446109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 2-228 | 
| Cow position: | chr6:57299081-57298869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 2-231 | 
| Cow position: | chr6:4691909-4692138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 54, 149 | 
| Conread position: | 2-242 | 
| Cow position: | chr6:44984396-44984162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 56 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:46865526-46865763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:47799359-47799128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:52901303-52901071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 69, 154 | 
| Conread position: | 2-248 | 
| Cow position: | chr6:53519558-53519793 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 85, 52 | 
| Conread position: | 2-255 | 
| Cow position: | chr6:60740080-60739841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 2-268 | 
| Cow position: | chr6:22502845-22503120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 139, 55 | 
| Conread position: | 2-275 | 
| Cow position: | chr6:20157399-20157120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 53, 73 | 
| Conread position: | 2-283 | 
| Cow position: | chr6:38771351-38771083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 246, 53 | 
| Conread position: | 2-283 | 
| Cow position: | chr6:49002666-49002937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 244, 60 | 
| Conread position: | 2-283 | 
| Cow position: | chr6:54140862-54140601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 248, 60 | 
| Conread position: | 2-286 | 
| Cow position: | chr6:10176236-10176517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 173, 52 | 
| Conread position: | 2-287 | 
| Cow position: | chr6:7190053-7190336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 247, 35 | 
| Conread position: | 2-287 | 
| Cow position: | chr6:28483081-28482798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 179, 51 | 
| Conread position: | 2-287 | 
| Cow position: | chr6:34196084-34196365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 25, 60 | 
| Conread position: | 2-287 | 
| Cow position: | chr6:48282058-48281778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 214, 72 | 
| Conread position: | 2-287 | 
| Cow position: | chr6:64432003-64431722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 98, 89 | 
| Conread position: | 2-288 | 
| Cow position: | chr6:10695929-10695651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 192, 50 | 
| Conread position: | 2-288 | 
| Cow position: | chr6:14958275-14958566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 37, 148 | 
| Conread position: | 2-290 | 
| Cow position: | chr6:52248066-52248353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 97, 59 | 
| Conread position: | 2-296 | 
| Cow position: | chr6:607329-607035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 27, 62 | 
| Conread position: | 2-298 | 
| Cow position: | chr6:11169766-11169481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 219, 127 | 
| Conread position: | 2-298 | 
| Cow position: | chr6:21004740-21004429 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 63, 85 | 
| Conread position: | 2-298 | 
| Cow position: | chr6:35181191-35181480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 56, 41 | 
| Conread position: | 2-298 | 
| Cow position: | chr6:40032256-40031967 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 7 | 
| Conread position: | 2-298 | 
| Cow position: | chr6:61631543-61631846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 9e-39 | 
| Alignm gaps (pig, cow): | 189, 59 | 
| Conread position: | 2-309 | 
| Cow position: | chr6:38218734-38218434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 248, 62 | 
| Conread position: | 2-313 | 
| Cow position: | chr6:37149255-37148955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 248, 69 | 
| Conread position: | 2-490 | 
| Cow position: | chr6:25407326-25407787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 2-498 | 
| Cow position: | chr6:50984288-50983792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 228, 56 | 
| Conread position: | 3-220 | 
| Cow position: | chr6:4559239-4559446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 3-237 | 
| Cow position: | chr6:37199462-37199699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 3-240 | 
| Cow position: | chr6:12542865-12543095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 53, 146 | 
| Conread position: | 3-247 | 
| Cow position: | chr6:60819578-60819346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 3-248 | 
| Cow position: | chr6:12669164-12668937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 171, 16 | 
| Conread position: | 3-248 | 
| Cow position: | chr6:66131372-66131138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 92, 55 | 
| Conread position: | 3-285 | 
| Cow position: | chr6:17997254-17997530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 248, 57 | 
| Conread position: | 3-287 | 
| Cow position: | chr6:19681460-19681737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 53, 85 | 
| Conread position: | 3-298 | 
| Cow position: | chr6:6264717-6264417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 57, 113 | 
| Conread position: | 3-300 | 
| Cow position: | chr6:17090664-17090370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 54, 8 | 
| Conread position: | 3-498 | 
| Cow position: | chr6:66874416-66873937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 246, 21 | 
| Conread position: | 4-153 | 
| Cow position: | chr6:13565152-13565001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 4-237 | 
| Cow position: | chr6:55763919-55763695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 4-241 | 
| Cow position: | chr6:14914172-14914402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 50, 21 | 
| Conread position: | 4-253 | 
| Cow position: | chr6:11246830-11246589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 58, 152 | 
| Conread position: | 4-285 | 
| Cow position: | chr6:34475495-34475758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 15, 10 | 
| Conread position: | 4-287 | 
| Cow position: | chr6:61515124-61515414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 140 | 
| Conread position: | 4-296 | 
| Cow position: | chr6:44078582-44078297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 244, 66 | 
| Conread position: | 4-298 | 
| Cow position: | chr6:50445702-50445986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 246, 55 | 
| Conread position: | 5-250 | 
| Cow position: | chr6:61137438-61137199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 176, 55 | 
| Conread position: | 5-493 | 
| Cow position: | chr6:21869586-21870066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 245, 98 | 
| Conread position: | 6-213 | 
| Cow position: | chr6:48803573-48803777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 53, 7 | 
| Conread position: | 6-237 | 
| Cow position: | chr6:40834406-40834632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 188, 58 | 
| Conread position: | 7-298 | 
| Cow position: | chr6:66303779-66304068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 55 | 
| Conread position: | 8-256 | 
| Cow position: | chr6:54288131-54287902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 9-195 | 
| Cow position: | chr6:19351099-19351274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 9-248 | 
| Cow position: | chr6:47574965-47574735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 115, 52 | 
| Conread position: | 9-283 | 
| Cow position: | chr6:62924939-62925208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 241, 52 | 
| Conread position: | 9-285 | 
| Cow position: | chr6:46558116-46557843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 57, 75 | 
| Conread position: | 9-287 | 
| Cow position: | chr6:8966156-8965873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 50, 24 | 
| Conread position: | 9-287 | 
| Cow position: | chr6:53932790-53933057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 254, 49 | 
| Conread position: | 9-288 | 
| Cow position: | chr6:60442473-60442201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 230, 44 | 
| Conread position: | 9-298 | 
| Cow position: | chr6:16411250-16410969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 239, 44 | 
| Conread position: | 9-298 | 
| Cow position: | chr6:47150851-47150552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 125, 67 | 
| Conread position: | 9-298 | 
| Cow position: | chr6:54365269-54365550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 241, 138 | 
| Conread position: | 9-482 | 
| Cow position: | chr6:8804470-8804918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 53 | 
| Conread position: | 9-487 | 
| Cow position: | chr6:46860108-46860578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 44, 62 | 
| Conread position: | 9-493 | 
| Cow position: | chr6:16103137-16103635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 52 | 
| Conread position: | 9-497 | 
| Cow position: | chr6:9323208-9322750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 185, 52 | 
| Conread position: | 10-266 | 
| Cow position: | chr6:53731582-53731326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 47, 55 | 
| Conread position: | 10-278 | 
| Cow position: | chr6:12630079-12629817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 239, 45 | 
| Conread position: | 10-287 | 
| Cow position: | chr6:29239999-29239726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 240, 48 | 
| Conread position: | 10-290 | 
| Cow position: | chr6:58074108-58073826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 49, 82 | 
| Conread position: | 10-298 | 
| Cow position: | chr6:28148312-28148022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 240, 151 | 
| Conread position: | 10-497 | 
| Cow position: | chr6:10254299-10253831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 43, 55 | 
| Conread position: | 10-498 | 
| Cow position: | chr6:55143043-55143515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 51 | 
| Conread position: | 13-285 | 
| Cow position: | chr6:3952573-3952310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 22, 15 | 
| Conread position: | 13-286 | 
| Cow position: | chr6:14838970-14839242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 20, 31 | 
| Conread position: | 13-287 | 
| Cow position: | chr6:53711170-53710901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 235, 49 | 
| Conread position: | 13-304 | 
| Cow position: | chr6:10105924-10106229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 53, 45 | 
| Conread position: | 14-243 | 
| Cow position: | chr6:60850332-60850555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 181, 46 | 
| Conread position: | 14-283 | 
| Cow position: | chr6:24962197-24961932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 185, 44 | 
| Conread position: | 14-287 | 
| Cow position: | chr6:35415461-35415738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 23, 32 | 
| Conread position: | 14-288 | 
| Cow position: | chr6:8637332-8637057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 56, 48 | 
| Conread position: | 14-288 | 
| Cow position: | chr6:51674964-51674700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 236, 47 | 
| Conread position: | 14-292 | 
| Cow position: | chr6:26915385-26915109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 159, 56 | 
| Conread position: | 14-298 | 
| Cow position: | chr6:130107-130391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 8e-38 | 
| Alignm gaps (pig, cow): | 185, 89 | 
| Conread position: | 14-298 | 
| Cow position: | chr6:52478357-52478654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 50, 159 | 
| Conread position: | 14-498 | 
| Cow position: | chr6:49685639-49685168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 235, 50 | 
| Conread position: | 15-248 | 
| Cow position: | chr6:49604729-49604513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 15-282 | 
| Cow position: | chr6:58076283-58076013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 46 | 
| Conread position: | 15-283 | 
| Cow position: | chr6:62325045-62324777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-33 | 
| Alignm gaps (pig, cow): | 233, 42 | 
| Conread position: | 15-285 | 
| Cow position: | chr6:5957975-5958231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 182, 46 | 
| Conread position: | 15-285 | 
| Cow position: | chr6:62479107-62479380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 40, 50 | 
| Conread position: | 15-287 | 
| Cow position: | chr6:6460595-6460325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 235, 43 | 
| Conread position: | 15-287 | 
| Cow position: | chr6:16738072-16737804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 230, 45 | 
| Conread position: | 15-287 | 
| Cow position: | chr6:25773332-25773598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 50, 84 | 
| Conread position: | 15-292 | 
| Cow position: | chr6:13741754-13741475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 140, 46 | 
| Conread position: | 15-292 | 
| Cow position: | chr6:45160245-45160512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 235, 38 | 
| Conread position: | 15-296 | 
| Cow position: | chr6:2423798-2423524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 236, 96 | 
| Conread position: | 15-296 | 
| Cow position: | chr6:16746396-16746115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 174, 52 | 
| Conread position: | 15-298 | 
| Cow position: | chr6:42961304-42961594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 39, 93 | 
| Conread position: | 15-300 | 
| Cow position: | chr6:51581199-51581488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 58, 81 | 
| Conread position: | 15-302 | 
| Cow position: | chr6:44511299-44511008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 18, 26 | 
| Conread position: | 15-498 | 
| Cow position: | chr6:67304858-67304390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 103 | 
| Conread position: | 15-503 | 
| Cow position: | chr6:53652093-53651595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 18 | 
| Conread position: | 16-306 | 
| Cow position: | chr6:38441227-38440945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 234, 36 | 
| Conread position: | 16-313 | 
| Cow position: | chr6:52025598-52025893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 234, 135 | 
| Conread position: | 17-248 | 
| Cow position: | chr6:26909816-26910039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 17-250 | 
| Cow position: | chr6:416157-415922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 40, 137 | 
| Conread position: | 17-292 | 
| Cow position: | chr6:20230775-20231046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 233, 132 | 
| Conread position: | 17-298 | 
| Cow position: | chr6:21311707-21311985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 117, 45 | 
| Conread position: | 18-248 | 
| Cow position: | chr6:46292296-46292508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 18-265 | 
| Cow position: | chr6:8187470-8187705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 178, 42 | 
| Conread position: | 18-287 | 
| Cow position: | chr6:3978612-3978880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 55, 34 | 
| Conread position: | 18-298 | 
| Cow position: | chr6:32335851-32335590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 245, 54 | 
| Conread position: | 19-287 | 
| Cow position: | chr6:60456878-60456613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 50, 80 | 
| Conread position: | 19-294 | 
| Cow position: | chr6:5462011-5462271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 223, 10 | 
| Conread position: | 20-287 | 
| Cow position: | chr6:48344381-48344111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 24, 42 | 
| Conread position: | 20-292 | 
| Cow position: | chr6:19427507-19427228 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 8, 107 | 
| Conread position: | 23-299 | 
| Cow position: | chr6:9375330-9375602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 174, 49 | 
| Conread position: | 25-285 | 
| Cow position: | chr6:54294145-54293896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 225, 32 | 
| Conread position: | 25-287 | 
| Cow position: | chr6:31526095-31525832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 27, 124 | 
| Conread position: | 25-290 | 
| Cow position: | chr6:56850060-56849799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 35, 123 | 
| Conread position: | 25-455 | 
| Cow position: | chr6:9452727-9453160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 46, 25 | 
| Conread position: | 27-294 | 
| Cow position: | chr6:23247921-23248186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 40, 72 | 
| Conread position: | 28-248 | 
| Cow position: | chr6:18968740-18968943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 28-287 | 
| Cow position: | chr6:4864507-4864751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 222, 25 | 
| Conread position: | 29-213 | 
| Cow position: | chr6:357847-358030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 165, 120 | 
| Conread position: | 29-280 | 
| Cow position: | chr6:58732264-58732524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 15, 37 | 
| Conread position: | 30-246 | 
| Cow position: | chr6:58363970-58364180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 44, 126 | 
| Conread position: | 30-285 | 
| Cow position: | chr6:7539613-7539358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 64, 30 | 
| Conread position: | 30-286 | 
| Cow position: | chr6:54884865-54885129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-35 | 
| Alignm gaps (pig, cow): | 36, 124 | 
| Conread position: | 30-298 | 
| Cow position: | chr6:53178675-53178413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 220, 40 | 
| Conread position: | 34-297 | 
| Cow position: | chr6:67544262-67544520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 216, 23 | 
| Conread position: | 34-443 | 
| Cow position: | chr6:64449424-64449016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 214, 27 | 
| Conread position: | 35-287 | 
| Cow position: | chr6:35539475-35539716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 204, 22 | 
| Conread position: | 39-248 | 
| Cow position: | chr6:48425287-48425491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 7, 113 | 
| Conread position: | 39-298 | 
| Cow position: | chr6:63047607-63047349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 169, 22 | 
| Conread position: | 44-337 | 
| Cow position: | chr6:21110993-21110705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 23, 107 | 
| Conread position: | 45-493 | 
| Cow position: | chr6:28079873-28080328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 7, 26 | 
| Conread position: | 47-228 | 
| Cow position: | chr6:67574426-67574256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 58-287 | 
| Cow position: | chr6:61575621-61575387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 115, 77 | 
| Conread position: | 58-298 | 
| Cow position: | chr6:10332079-10332323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 133, 16 | 
| Conread position: | 61-285 | 
| Cow position: | chr6:389183-388956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 33, 92 | 
| Conread position: | 62-296 | 
| Cow position: | chr6:39994454-39994686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 142, 12 | 
| Conread position: | 65-287 | 
| Cow position: | chr6:2607619-2607396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 128, 9 | 
| Conread position: | 65-296 | 
| Cow position: | chr6:12500863-12500635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 126, 20 | 
| Conread position: | 65-298 | 
| Cow position: | chr6:24327136-24327362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 185, 62 | 
| Conread position: | 67-287 | 
| Cow position: | chr6:32210625-32210843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 172, 89 | 
| Conread position: | 70-276 | 
| Cow position: | chr6:6098283-6098488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 52, 80 | 
| Conread position: | 70-287 | 
| Cow position: | chr6:40264200-40264414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 180, 79 | 
| Conread position: | 72-284 | 
| Cow position: | chr6:38853657-38853872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 38, 56 | 
| Conread position: | 73-248 | 
| Cow position: | chr6:33277040-33276869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 121, 76 | 
| Conread position: | 73-281 | 
| Cow position: | chr6:53138924-53139140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 123, 68 | 
| Conread position: | 73-299 | 
| Cow position: | chr6:7103232-7103463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 124, 76 | 
| Conread position: | 73-459 | 
| Cow position: | chr6:48572886-48573280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 123, 51 | 
| Conread position: | 75-298 | 
| Cow position: | chr6:21587422-21587648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 120, 29 | 
| Conread position: | 77-298 | 
| Cow position: | chr6:35471526-35471753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 114, 71 | 
| Conread position: | 86-285 | 
| Cow position: | chr6:20605920-20605719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 83, 66 | 
| Conread position: | 87-287 | 
| Cow position: | chr6:7694365-7694570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 107, 62 | 
| Conread position: | 104-278 | 
| Cow position: | chr6:7989443-7989621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-28 | 
| Alignm gaps (pig, cow): | 90, 45 | 
| Conread position: | 104-280 | 
| Cow position: | chr6:46667078-46666894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 49, 128 | 
| Conread position: | 104-287 | 
| Cow position: | chr6:21535022-21534842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 146, 45 | 
| Conread position: | 104-298 | 
| Cow position: | chr6:61113723-61113523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 87, 45 | 
| Conread position: | 105-298 | 
| Cow position: | chr6:20329991-20329794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 8, 51 | 
| Conread position: | 107-248 | 
| Cow position: | chr6:46245354-46245493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 107-329 | 
| Cow position: | chr6:59301857-59302084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 90, 42 | 
| Conread position: | 108-288 | 
| Cow position: | chr6:28559386-28559197 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 50, 125 | 
| Conread position: | 128-306 | 
| Cow position: | chr6:6117602-6117784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 16, 5 | 
| Conread position: | 143-306 | 
| Cow position: | chr6:60781515-60781683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 56, 11 | 
| Conread position: | 144-493 | 
| Cow position: | chr6:16288491-16288842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 9, 32 | 
| Conread position: | 158-456 | 
| Cow position: | chr6:65846525-65846837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 13, 73 | 
| Conread position: | 160-498 | 
| Cow position: | chr6:16298606-16298258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 84, 37 | 
| Conread position: | 182-388 | 
| Cow position: | chr6:48406458-48406246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 67, 114 | 
| Conread position: | 195-488 | 
| Cow position: | chr6:64314083-64314376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 55, 29 | 
| Conread position: | 199-498 | 
| Cow position: | chr6:19045263-19044948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 51, 31 | 
Show alignments to all cow chromosomes.
