Cow genome map
| Conread name: | Lng1-LNG010009D01 |
| Conread position: | 8-144 |
| Cow position: | chr1:77822696-77822559 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 27-495 |
| Cow position: | chr1:92905246-92905725 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 150 |
| Conread position: | 30-495 |
| Cow position: | chr1:73500813-73500339 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 202 |
| Conread position: | 31-321 |
| Cow position: | chr1:38372839-38373131 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 128, 225 |
| Conread position: | 31-323 |
| Cow position: | chr1:98309176-98308887 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 181, 45 |
| Conread position: | 31-503 |
| Cow position: | chr1:61717366-61717843 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 119 |
| Conread position: | 32-502 |
| Cow position: | chr1:10709767-10709287 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 33-155 |
| Cow position: | chr1:54122563-54122441 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-260 |
| Cow position: | chr1:12067027-12066808 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 215, 74 |
| Conread position: | 35-321 |
| Cow position: | chr1:3015372-3015663 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 78 |
| Conread position: | 35-322 |
| Cow position: | chr1:83147206-83146917 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 35-328 |
| Cow position: | chr1:14381735-14382021 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 35-366 |
| Cow position: | chr1:101804268-101804594 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 35-368 |
| Cow position: | chr1:92959145-92959488 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 187 |
| Conread position: | 35-413 |
| Cow position: | chr1:4036264-4035878 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 35-493 |
| Cow position: | chr1:86711857-86712312 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 383, 186 |
| Conread position: | 35-495 |
| Cow position: | chr1:6843112-6843575 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 35-495 |
| Cow position: | chr1:77791269-77791739 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 35-502 |
| Cow position: | chr1:22042965-22043425 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 125, 196 |
| Conread position: | 35-502 |
| Cow position: | chr1:62813322-62812842 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 36-279 |
| Cow position: | chr1:10958151-10957907 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 27, 154 |
| Conread position: | 38-185 |
| Cow position: | chr1:85639722-85639575 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-173 |
| Cow position: | chr1:38280542-38280672 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-495 |
| Cow position: | chr1:20260718-20260289 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 20 |
| Conread position: | 44-503 |
| Cow position: | chr1:47788319-47788776 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 147 |
| Conread position: | 47-495 |
| Cow position: | chr1:49985586-49985142 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 319 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 192, 16 |
| Conread position: | 47-520 |
| Cow position: | chr1:89893405-89893891 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 335 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 48-494 |
| Cow position: | chr1:60416611-60417055 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 58 |
| Conread position: | 54-344 |
| Cow position: | chr1:70091438-70091157 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 192, 127 |
| Conread position: | 61-495 |
| Cow position: | chr1:69304158-69303732 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 76 |
| Conread position: | 83-495 |
| Cow position: | chr1:39065346-39065758 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 86 |
| Conread position: | 94-326 |
| Cow position: | chr1:98327278-98327515 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 235 |
| Conread position: | 190-502 |
| Cow position: | chr1:54122433-54122129 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 229-495 |
| Cow position: | chr1:85846530-85846803 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 22, 16 |
| Conread position: | 264-495 |
| Cow position: | chr1:99248578-99248806 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 64, 90 |
| Conread position: | 296-495 |
| Cow position: | chr1:40726405-40726612 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 307-463 |
| Cow position: | chr1:83146912-83146747 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 308-494 |
| Cow position: | chr1:10957634-10957443 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 308-496 |
| Cow position: | chr1:85639488-85639296 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 315-503 |
| Cow position: | chr1:3015677-3015873 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 51 |
Show alignments to all cow chromosomes.