Cow genome map

Conread name: Lng1-LNG010013G12

Conread position: 1-635
Cow position: chr13:32737481-32736821 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 175

Conread position: 1-787
Cow position: chr13:30303626-30304460 (view UCSC Genome Browser custom track)
Alignm length: 837
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 171

Conread position: 1-831
Cow position: chr13:15520164-15519323 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 635
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr13:3653977-3653109 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 664
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr13:13900212-13901072 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr13:15924036-15923175 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 669
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 144

Conread position: 1-833
Cow position: chr13:31611960-31611104 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 97

Conread position: 5-590
Cow position: chr13:60700310-60699707 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 54

Conread position: 5-831
Cow position: chr13:6667768-6666931 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 639
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 168

Conread position: 5-831
Cow position: chr13:32985001-32984142 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 636
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 6-665
Cow position: chr13:16255026-16254351 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 57

Conread position: 6-718
Cow position: chr13:1592804-1592071 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 166

Conread position: 6-727
Cow position: chr13:60466679-60467427 (view UCSC Genome Browser custom track)
Alignm length: 754
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 157

Conread position: 6-816
Cow position: chr13:21839852-21839006 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 620
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-823
Cow position: chr13:34325209-34324385 (view UCSC Genome Browser custom track)
Alignm length: 851
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 6-825
Cow position: chr13:50109806-50110649 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 52

Conread position: 6-831
Cow position: chr13:2388465-2387603 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 624
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 168

Conread position: 6-831
Cow position: chr13:17308816-17309666 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 626
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 174

Conread position: 6-831
Cow position: chr13:32545729-32546594 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 660
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 6-831
Cow position: chr13:47229655-47228795 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 640
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-831
Cow position: chr13:49974030-49974868 (view UCSC Genome Browser custom track)
Alignm length: 859
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 114

Conread position: 6-833
Cow position: chr13:15450763-15449936 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 626
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 105

Conread position: 7-833
Cow position: chr13:4484148-4484997 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 633
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 121

Conread position: 9-677
Cow position: chr13:42218564-42217866 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 49

Conread position: 11-821
Cow position: chr13:34937834-34938636 (view UCSC Genome Browser custom track)
Alignm length: 838
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 202

Conread position: 14-519
Cow position: chr13:20541679-20541167 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 159

Conread position: 17-755
Cow position: chr13:30277980-30278738 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 161

Conread position: 17-795
Cow position: chr13:43982724-43981943 (view UCSC Genome Browser custom track)
Alignm length: 803
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 15

Conread position: 37-758
Cow position: chr13:31556347-31555608 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 67

Conread position: 56-526
Cow position: chr13:3056735-3056244 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 117

Conread position: 56-833
Cow position: chr13:5625592-5624790 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 601
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 53

Conread position: 62-833
Cow position: chr13:5628399-5627642 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 44

Conread position: 74-458
Cow position: chr13:19440988-19441390 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 283
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 44

Conread position: 74-590
Cow position: chr13:26844466-26844968 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 52

Conread position: 77-833
Cow position: chr13:4941811-4942589 (view UCSC Genome Browser custom track)
Alignm length: 793
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 96

Conread position: 79-441
Cow position: chr13:33335886-33335508 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 94

Conread position: 81-715
Cow position: chr13:6758408-6759075 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 76

Conread position: 101-555
Cow position: chr13:34766000-34765538 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 61

Conread position: 108-817
Cow position: chr13:9045238-9045953 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 57

Conread position: 120-528
Cow position: chr13:28670795-28670371 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 53

Conread position: 121-825
Cow position: chr13:31730407-31729697 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 22

Conread position: 135-560
Cow position: chr13:52646396-52645950 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 38

Conread position: 143-833
Cow position: chr13:34041846-34041130 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 30

Conread position: 219-833
Cow position: chr13:17331191-17330580 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 19

Conread position: 220-833
Cow position: chr13:35757844-35758489 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 397

Conread position: 226-822
Cow position: chr13:34049316-34049930 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 66

Conread position: 228-816
Cow position: chr13:11798131-11797527 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 165

Conread position: 231-833
Cow position: chr13:15543124-15543744 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 66

Conread position: 238-825
Cow position: chr13:8797197-8796610 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 27

Conread position: 243-617
Cow position: chr13:34154162-34153772 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 19

Conread position: 243-831
Cow position: chr13:21696846-21697466 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 243-833
Cow position: chr13:30654786-30654190 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 284

Conread position: 272-833
Cow position: chr13:28347628-28347053 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 376
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 15, 168

Conread position: 319-783
Cow position: chr13:42202554-42202086 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 13

Conread position: 335-821
Cow position: chr13:43590030-43590516 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 141

Conread position: 336-822
Cow position: chr13:34020006-34019543 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 314
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 16

Conread position: 337-755
Cow position: chr13:57823969-57823551 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 292, 106

Conread position: 341-833
Cow position: chr13:14402393-14401902 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 358

Conread position: 342-551
Cow position: chr13:47861533-47861744 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 85, 7

Conread position: 342-831
Cow position: chr13:13325626-13326131 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 396

Conread position: 342-831
Cow position: chr13:31733184-31732691 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 127

Conread position: 343-810
Cow position: chr13:44653109-44652647 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 137

Conread position: 349-718
Cow position: chr13:6526431-6526807 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 242
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 103, 119

Conread position: 357-827
Cow position: chr13:30276589-30276121 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 315
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 74, 99

Conread position: 432-833
Cow position: chr13:23002208-23001808 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 58

Conread position: 433-825
Cow position: chr13:678549-678947 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 100

Conread position: 434-826
Cow position: chr13:37554513-37554889 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 254
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 108, 95

Conread position: 434-833
Cow position: chr13:30239125-30239519 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 8

Conread position: 445-833
Cow position: chr13:11794232-11793876 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 66

Conread position: 445-833
Cow position: chr13:48358455-48358838 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 110

Conread position: 482-833
Cow position: chr13:34030469-34030811 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 102

Conread position: 491-831
Cow position: chr13:17998414-17998761 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 238

Conread position: 491-832
Cow position: chr13:61052164-61051835 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 226
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 34, 23

Conread position: 502-831
Cow position: chr13:28860031-28860367 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 224

Conread position: 515-833
Cow position: chr13:32924245-32923928 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 128

Conread position: 524-825
Cow position: chr13:11738811-11739116 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 35, 77

Conread position: 549-825
Cow position: chr13:3482903-3482621 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 29, 6

Conread position: 558-831
Cow position: chr13:31507842-31508112 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 150, 116

Conread position: 560-823
Cow position: chr13:28670287-28670039 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 198
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 28, 77

Conread position: 561-833
Cow position: chr13:34342835-34343110 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 98

Conread position: 567-833
Cow position: chr13:34909087-34908831 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 126

Conread position: 583-831
Cow position: chr13:6358074-6358326 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 113, 143

Conread position: 610-830
Cow position: chr13:5501021-5500797 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 116

Conread position: 650-833
Cow position: chr13:42090670-42090486 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 36

Show alignments to all cow chromosomes.