Cow genome map
| Conread name: | Lng1-LNG010013G12 |
| Conread position: | 1-540 |
| Cow position: | chr21:10567410-10567967 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 177 |
| Conread position: | 1-668 |
| Cow position: | chr21:2883003-2882317 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 1-689 |
| Cow position: | chr21:1192495-1193204 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-759 |
| Cow position: | chr21:29816-30594 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 1-764 |
| Cow position: | chr21:5840529-5839726 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 628 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-829 |
| Cow position: | chr21:2416951-2417804 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 659 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 1-831 |
| Cow position: | chr21:10850815-10851671 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 660 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr21:146663-147519 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 655 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 176 |
| Conread position: | 1-833 |
| Cow position: | chr21:35144497-35145346 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 666 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr21:40270937-40270077 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 650 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 3-505 |
| Cow position: | chr21:13313507-13314019 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 55 |
| Conread position: | 4-806 |
| Cow position: | chr21:18817821-18816993 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 5-439 |
| Cow position: | chr21:445865-446312 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 5-830 |
| Cow position: | chr21:37371986-37372827 (view UCSC Genome Browser custom track) |
| Alignm length: | 858 |
| Alignm identity: | 635 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 53 |
| Conread position: | 6-551 |
| Cow position: | chr21:37046362-37046930 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 170 |
| Conread position: | 6-754 |
| Cow position: | chr21:467619-468372 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 169 |
| Conread position: | 6-829 |
| Cow position: | chr21:1287478-1286622 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 6-829 |
| Cow position: | chr21:2540346-2539494 (view UCSC Genome Browser custom track) |
| Alignm length: | 888 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 6-831 |
| Cow position: | chr21:11506337-11507207 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 170 |
| Conread position: | 6-831 |
| Cow position: | chr21:12055259-12054424 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 623 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 167 |
| Conread position: | 6-831 |
| Cow position: | chr21:39425803-39426665 (view UCSC Genome Browser custom track) |
| Alignm length: | 873 |
| Alignm identity: | 638 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 170 |
| Conread position: | 25-833 |
| Cow position: | chr21:4184663-4185514 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 638 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 151 |
| Conread position: | 32-833 |
| Cow position: | chr21:3779534-3780369 (view UCSC Genome Browser custom track) |
| Alignm length: | 842 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 144 |
| Conread position: | 37-808 |
| Cow position: | chr21:20743803-20743053 (view UCSC Genome Browser custom track) |
| Alignm length: | 796 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 80 |
| Conread position: | 43-587 |
| Cow position: | chr21:25782421-25782985 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 49-830 |
| Cow position: | chr21:16693026-16693805 (view UCSC Genome Browser custom track) |
| Alignm length: | 804 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 108 |
| Conread position: | 77-732 |
| Cow position: | chr21:26402674-26401998 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 96 |
| Conread position: | 77-833 |
| Cow position: | chr21:27070153-27069365 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 96 |
| Conread position: | 77-833 |
| Cow position: | chr21:33252991-33253778 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 81-833 |
| Cow position: | chr21:360461-361260 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 92 |
| Conread position: | 85-674 |
| Cow position: | chr21:1689336-1688720 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 108-833 |
| Cow position: | chr21:31515480-31514719 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 58 |
| Conread position: | 130-631 |
| Cow position: | chr21:23297944-23297434 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 154, 17 |
| Conread position: | 151-732 |
| Cow position: | chr21:34001786-34001187 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 151-829 |
| Cow position: | chr21:1778486-1779183 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 444 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 180-569 |
| Cow position: | chr21:5018031-5018442 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 199-831 |
| Cow position: | chr21:2511777-2512442 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 294 |
| Conread position: | 224-833 |
| Cow position: | chr21:2711935-2712513 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 17 |
| Conread position: | 238-831 |
| Cow position: | chr21:34823231-34822617 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 42 |
| Conread position: | 252-831 |
| Cow position: | chr21:42914361-42914958 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 275 |
| Conread position: | 279-670 |
| Cow position: | chr21:26835913-26836326 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 381 |
| Conread position: | 323-832 |
| Cow position: | chr21:36979833-36979316 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 13 |
| Conread position: | 335-833 |
| Cow position: | chr21:45782572-45783067 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 184 |
| Conread position: | 335-833 |
| Cow position: | chr21:47942038-47942544 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 336-832 |
| Cow position: | chr21:28985208-28985693 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 111 |
| Conread position: | 337-685 |
| Cow position: | chr21:4789553-4789206 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 338-833 |
| Cow position: | chr21:4716115-4716615 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 11 |
| Conread position: | 339-692 |
| Cow position: | chr21:21138579-21138932 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 10 |
| Conread position: | 341-788 |
| Cow position: | chr21:2673910-2673454 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 388 |
| Conread position: | 341-833 |
| Cow position: | chr21:27284549-27285064 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 404 |
| Conread position: | 341-833 |
| Cow position: | chr21:30598378-30597873 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 72 |
| Conread position: | 342-541 |
| Cow position: | chr21:29625646-29625444 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 342-810 |
| Cow position: | chr21:3169494-3169955 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 342-820 |
| Cow position: | chr21:27036303-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 110 |
| Conread position: | 344-825 |
| Cow position: | chr21:26849921-26849431 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 41 |
| Conread position: | 346-833 |
| Cow position: | chr21:28736275-28736764 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 208 |
| Conread position: | 353-813 |
| Cow position: | chr21:40683337-40682868 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 250 |
| Conread position: | 356-833 |
| Cow position: | chr21:47646453-47646930 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 366-756 |
| Cow position: | chr21:11452424-11452023 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 147 |
| Conread position: | 385-821 |
| Cow position: | chr21:39589986-39590432 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 416-833 |
| Cow position: | chr21:4180616-4180192 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 20, 176 |
| Conread position: | 420-833 |
| Cow position: | chr21:27566921-27567341 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 204 |
| Conread position: | 432-831 |
| Cow position: | chr21:26635952-26635564 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 27 |
| Conread position: | 449-833 |
| Cow position: | chr21:44640290-44639916 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 495-832 |
| Cow position: | chr21:29004261-29003943 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 516-833 |
| Cow position: | chr21:5018416-5018735 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 532-816 |
| Cow position: | chr21:6625812-6626111 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 210 |
| Conread position: | 591-825 |
| Cow position: | chr21:25783203-25783445 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 640-824 |
| Cow position: | chr21:28613724-28613914 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 654-833 |
| Cow position: | chr21:2880407-2880226 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 94 |
Show alignments to all cow chromosomes.