Cow genome map

Conread name: Lng1-LNG010013G12

Conread position: 1-551
Cow position: chr22:31313909-31314476 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 171

Conread position: 1-615
Cow position: chr22:15313386-15312746 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 164

Conread position: 1-745
Cow position: chr22:1322783-1323550 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 579
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 21

Conread position: 1-779
Cow position: chr22:21589900-21590702 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 575
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-812
Cow position: chr22:31334472-31333641 (view UCSC Genome Browser custom track)
Alignm length: 848
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-816
Cow position: chr22:19143124-19142273 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 640
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 27

Conread position: 1-825
Cow position: chr22:44397013-44397847 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 635
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 168

Conread position: 1-831
Cow position: chr22:34168901-34169761 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 673
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr22:560138-559281 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 650
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 161

Conread position: 1-833
Cow position: chr22:1520452-1519599 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 18

Conread position: 1-833
Cow position: chr22:18815815-18814941 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 652
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 127

Conread position: 1-833
Cow position: chr22:42991742-42992599 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr22:44934547-44935392 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 653
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 171

Conread position: 3-651
Cow position: chr22:37133208-37133894 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 174

Conread position: 5-567
Cow position: chr22:44457623-44458213 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 170

Conread position: 5-718
Cow position: chr22:9044719-9045438 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 83

Conread position: 5-831
Cow position: chr22:36184324-36185179 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 171

Conread position: 6-512
Cow position: chr22:37072510-37071983 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 30

Conread position: 6-519
Cow position: chr22:41239945-41240471 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 76

Conread position: 6-527
Cow position: chr22:1806433-1806950 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 354
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 35, 83

Conread position: 6-568
Cow position: chr22:44369058-44368458 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 107

Conread position: 6-570
Cow position: chr22:5232712-5232131 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 170

Conread position: 6-812
Cow position: chr22:6021230-6022067 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 615
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-816
Cow position: chr22:6502564-6501731 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 612
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 134

Conread position: 6-824
Cow position: chr22:11804489-11803636 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 624
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-825
Cow position: chr22:326599-325769 (view UCSC Genome Browser custom track)
Alignm length: 860
Alignm identity: 629
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 10

Conread position: 6-825
Cow position: chr22:694193-695032 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 622
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 138

Conread position: 6-825
Cow position: chr22:10909266-10908420 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 633
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 167

Conread position: 6-831
Cow position: chr22:537668-538532 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 633
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 170

Conread position: 6-831
Cow position: chr22:1879361-1880226 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 637
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-831
Cow position: chr22:3277787-3276935 (view UCSC Genome Browser custom track)
Alignm length: 865
Alignm identity: 645
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 134

Conread position: 6-831
Cow position: chr22:18027849-18028710 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 641
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-831
Cow position: chr22:20240275-20239415 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 628
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-831
Cow position: chr22:27309208-27308356 (view UCSC Genome Browser custom track)
Alignm length: 857
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 6-833
Cow position: chr22:12731100-12730272 (view UCSC Genome Browser custom track)
Alignm length: 854
Alignm identity: 641
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 10

Conread position: 7-832
Cow position: chr22:4243029-4242212 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 530
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 54, 89

Conread position: 9-648
Cow position: chr22:11032325-11032988 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 102

Conread position: 9-820
Cow position: chr22:13674224-13673395 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 28

Conread position: 9-833
Cow position: chr22:36860960-36860124 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 661
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 168

Conread position: 12-831
Cow position: chr22:522819-521971 (view UCSC Genome Browser custom track)
Alignm length: 858
Alignm identity: 616
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 25

Conread position: 14-831
Cow position: chr22:37267738-37268589 (view UCSC Genome Browser custom track)
Alignm length: 855
Alignm identity: 603
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 160

Conread position: 16-833
Cow position: chr22:6332297-6333137 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 647
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 160

Conread position: 17-833
Cow position: chr22:39468942-39468090 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 649
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 159

Conread position: 18-831
Cow position: chr22:3802777-3803603 (view UCSC Genome Browser custom track)
Alignm length: 842
Alignm identity: 628
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 53

Conread position: 25-424
Cow position: chr22:6142790-6142380 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 96

Conread position: 28-526
Cow position: chr22:27997984-27997476 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 308
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 24, 148

Conread position: 28-829
Cow position: chr22:33953466-33954272 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 512
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 146

Conread position: 67-490
Cow position: chr22:9270969-9271408 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 293
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 155, 81

Conread position: 78-536
Cow position: chr22:36551596-36551128 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 95

Conread position: 78-570
Cow position: chr22:44351019-44350503 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 95

Conread position: 80-830
Cow position: chr22:291051-290278 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 27

Conread position: 84-833
Cow position: chr22:37293021-37292250 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 595
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 89

Conread position: 106-618
Cow position: chr22:41418628-41418116 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 62

Conread position: 111-833
Cow position: chr22:10304621-10303914 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 466
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 14, 52

Conread position: 128-833
Cow position: chr22:17327762-17327034 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 557
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 45

Conread position: 129-825
Cow position: chr22:8737619-8736935 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 7

Conread position: 153-661
Cow position: chr22:37140625-37141150 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 20

Conread position: 176-833
Cow position: chr22:1281983-1281310 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 194

Conread position: 228-831
Cow position: chr22:16201726-16202335 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 390

Conread position: 255-529
Cow position: chr22:36276447-36276745 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 80, 288

Conread position: 263-833
Cow position: chr22:35906550-35905966 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 237

Conread position: 276-605
Cow position: chr22:46612722-46613057 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 115

Conread position: 279-833
Cow position: chr22:45510678-45510119 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 49

Conread position: 283-833
Cow position: chr22:316369-316929 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 188

Conread position: 294-833
Cow position: chr22:13547894-13547348 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 107

Conread position: 332-543
Cow position: chr22:23770672-23770883 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 97, 39

Conread position: 336-832
Cow position: chr22:5937236-5936745 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 113

Conread position: 339-788
Cow position: chr22:40370373-40370819 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 127

Conread position: 341-743
Cow position: chr22:19319937-19320359 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 343-777
Cow position: chr22:3273235-3272794 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 98

Conread position: 350-833
Cow position: chr22:35916080-35915601 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 308
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 96, 170

Conread position: 360-833
Cow position: chr22:13773471-13773944 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 254

Conread position: 361-670
Cow position: chr22:44477570-44477882 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 22

Conread position: 365-830
Cow position: chr22:202667-203135 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 292
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 75, 172

Conread position: 366-822
Cow position: chr22:46580772-46580305 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 337

Conread position: 368-679
Cow position: chr22:35162993-35163316 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 219
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 61, 188

Conread position: 371-813
Cow position: chr22:24536715-24537163 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 44

Conread position: 371-821
Cow position: chr22:44606718-44606270 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 56

Conread position: 381-833
Cow position: chr22:34600314-34600766 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 135

Conread position: 385-831
Cow position: chr22:19536522-19536975 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 139

Conread position: 401-832
Cow position: chr22:1268773-1268330 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 47

Conread position: 405-833
Cow position: chr22:8121095-8120664 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 324

Conread position: 415-831
Cow position: chr22:45581924-45582337 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 81

Conread position: 432-831
Cow position: chr22:35670627-35670243 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 26

Conread position: 433-831
Cow position: chr22:44492072-44492477 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 88

Conread position: 435-833
Cow position: chr22:3305556-3305174 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 127

Conread position: 466-833
Cow position: chr22:39689550-39689902 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 245
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 22

Conread position: 476-833
Cow position: chr22:21195429-21195073 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 182

Conread position: 482-833
Cow position: chr22:23801131-23800793 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 73

Conread position: 495-833
Cow position: chr22:33351761-33352092 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 243
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 66, 123

Conread position: 502-829
Cow position: chr22:16438533-16438851 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 214
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 60, 9

Conread position: 503-831
Cow position: chr22:7304566-7304232 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 97

Conread position: 513-833
Cow position: chr22:38550491-38550808 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 176

Conread position: 519-831
Cow position: chr22:24951662-24951979 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 208

Conread position: 528-833
Cow position: chr22:15852530-15852847 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 32, 135

Conread position: 531-826
Cow position: chr22:19243527-19243814 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 13, 23

Conread position: 555-831
Cow position: chr22:46585421-46585142 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 167

Conread position: 560-831
Cow position: chr22:44368323-44368060 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 37

Conread position: 561-825
Cow position: chr22:44348705-44348442 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 204
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 131, 76

Conread position: 600-833
Cow position: chr22:46614492-46614727 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 91, 62

Conread position: 621-833
Cow position: chr22:15352089-15352297 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 102

Show alignments to all cow chromosomes.