Cow genome map
| Conread name: | Lng1-LNG010013G12 |
| Conread position: | 1-570 |
| Cow position: | chr28:5113686-5113091 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 161 |
| Conread position: | 1-677 |
| Cow position: | chr28:1814254-1813552 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-820 |
| Cow position: | chr28:13460582-13461436 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 662 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 1-821 |
| Cow position: | chr28:5566764-5567590 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 634 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-825 |
| Cow position: | chr28:29820615-29821460 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 640 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 75 |
| Conread position: | 1-831 |
| Cow position: | chr28:32791765-32790924 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 652 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr28:1167267-1166420 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 652 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 1-833 |
| Cow position: | chr28:1505480-1506336 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 641 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 114 |
| Conread position: | 1-833 |
| Cow position: | chr28:3191641-3190783 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 658 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 137 |
| Conread position: | 1-833 |
| Cow position: | chr28:5751094-5750234 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 655 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 181 |
| Conread position: | 1-833 |
| Cow position: | chr28:5938094-5938957 (view UCSC Genome Browser custom track) |
| Alignm length: | 869 |
| Alignm identity: | 658 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr28:7002606-7003467 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 650 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 1-833 |
| Cow position: | chr28:12150915-12151799 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 657 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr28:12180455-12179627 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-833 |
| Cow position: | chr28:12409616-12408756 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 1-833 |
| Cow position: | chr28:14704778-14703914 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 653 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 1-833 |
| Cow position: | chr28:17666692-17665838 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 663 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr28:18519835-18518978 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 651 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 135 |
| Conread position: | 1-833 |
| Cow position: | chr28:22260541-22259681 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 659 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 1-833 |
| Cow position: | chr28:26425636-26424789 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 657 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 1-833 |
| Cow position: | chr28:33252920-33253778 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 651 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 35 |
| Conread position: | 3-833 |
| Cow position: | chr28:24668235-24669071 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 642 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 105 |
| Conread position: | 4-699 |
| Cow position: | chr28:5814007-5814691 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 5-820 |
| Cow position: | chr28:21360094-21360948 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 647 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 171 |
| Conread position: | 6-388 |
| Cow position: | chr28:25169456-25169064 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 6-659 |
| Cow position: | chr28:6538648-6537969 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 6-666 |
| Cow position: | chr28:14751159-14751846 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 6-684 |
| Cow position: | chr28:10071894-10072596 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 6-831 |
| Cow position: | chr28:24589467-24590324 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 632 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 162 |
| Conread position: | 6-833 |
| Cow position: | chr28:1386783-1385936 (view UCSC Genome Browser custom track) |
| Alignm length: | 867 |
| Alignm identity: | 646 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 272 |
| Conread position: | 6-833 |
| Cow position: | chr28:8720331-8719483 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 644 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 47 |
| Conread position: | 13-833 |
| Cow position: | chr28:15035472-15034642 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 606 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 160 |
| Conread position: | 17-831 |
| Cow position: | chr28:7741097-7741902 (view UCSC Genome Browser custom track) |
| Alignm length: | 838 |
| Alignm identity: | 628 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 159 |
| Conread position: | 37-832 |
| Cow position: | chr28:5802679-5803490 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 122 |
| Conread position: | 50-820 |
| Cow position: | chr28:10646738-10645973 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 66 |
| Conread position: | 76-821 |
| Cow position: | chr28:9242445-9241694 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 483 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 161, 18 |
| Conread position: | 77-831 |
| Cow position: | chr28:783365-784129 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 96 |
| Conread position: | 89-778 |
| Cow position: | chr28:7811165-7811836 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 73 |
| Conread position: | 108-605 |
| Cow position: | chr28:10581369-10580847 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 203 |
| Conread position: | 118-758 |
| Cow position: | chr28:8379786-8380461 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 55 |
| Conread position: | 134-732 |
| Cow position: | chr28:27678311-27678904 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 392 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 144-715 |
| Cow position: | chr28:24884222-24883631 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 150-607 |
| Cow position: | chr28:6232012-6231529 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 152-656 |
| Cow position: | chr28:29761165-29760633 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 175-601 |
| Cow position: | chr28:15684034-15684468 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 181-825 |
| Cow position: | chr28:1954173-1954821 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 188-831 |
| Cow position: | chr28:9179425-9180084 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 201 |
| Conread position: | 228-570 |
| Cow position: | chr28:1217307-1216947 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 75 |
| Conread position: | 228-833 |
| Cow position: | chr28:10460757-10460138 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 235-831 |
| Cow position: | chr28:484740-484126 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 45 |
| Conread position: | 246-565 |
| Cow position: | chr28:13603967-13603635 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 254-829 |
| Cow position: | chr28:5799169-5799756 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 235 |
| Conread position: | 263-829 |
| Cow position: | chr28:14194643-14194086 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 263-832 |
| Cow position: | chr28:14233057-14232452 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 267-473 |
| Cow position: | chr28:10873105-10873315 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 268-605 |
| Cow position: | chr28:2988197-2987846 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 270-830 |
| Cow position: | chr28:28749906-28750442 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 102 |
| Conread position: | 273-829 |
| Cow position: | chr28:18146838-18146276 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 331-759 |
| Cow position: | chr28:7788932-7788496 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 67 |
| Conread position: | 332-632 |
| Cow position: | chr28:7028813-7028520 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 342-604 |
| Cow position: | chr28:6457351-6457096 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 342-825 |
| Cow position: | chr28:22042303-22041824 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 172 |
| Conread position: | 343-696 |
| Cow position: | chr28:10470481-10470836 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 55 |
| Conread position: | 345-833 |
| Cow position: | chr28:10496558-10496074 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 358-833 |
| Cow position: | chr28:5765741-5766200 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 60 |
| Conread position: | 365-489 |
| Cow position: | chr28:11025898-11025771 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 416-832 |
| Cow position: | chr28:4575416-4575000 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 426-831 |
| Cow position: | chr28:6778883-6778471 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 304 |
| Conread position: | 432-831 |
| Cow position: | chr28:7827052-7827457 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 167 |
| Conread position: | 433-833 |
| Cow position: | chr28:2085525-2085934 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 322 |
| Conread position: | 433-833 |
| Cow position: | chr28:21566517-21566927 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 486-833 |
| Cow position: | chr28:17389520-17389871 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 172 |
| Conread position: | 502-833 |
| Cow position: | chr28:20634924-20634597 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 514-833 |
| Cow position: | chr28:15241538-15241209 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 522-833 |
| Cow position: | chr28:12648527-12648205 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 566-833 |
| Cow position: | chr28:1216634-1216362 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 58 |
| Conread position: | 585-832 |
| Cow position: | chr28:15684678-15684917 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 8, 129 |
| Conread position: | 593-833 |
| Cow position: | chr28:32269915-32270152 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 117 |
| Conread position: | 595-833 |
| Cow position: | chr28:2117209-2117448 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 601-833 |
| Cow position: | chr28:10580644-10580404 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 92, 109 |
| Conread position: | 634-833 |
| Cow position: | chr28:6786532-6786727 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 82, 134 |
| Conread position: | 638-833 |
| Cow position: | chr28:34595504-34595701 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 644-831 |
| Cow position: | chr28:1459371-1459562 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 712-833 |
| Cow position: | chr28:11510928-11510804 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 61 |
Show alignments to all cow chromosomes.