Cow genome map
| Conread name: | Lng1-LNG010013G12 |
| Conread position: | 1-397 |
| Cow position: | chr29:16173753-16173350 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 1-590 |
| Cow position: | chr29:6265700-6265075 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 1-729 |
| Cow position: | chr29:43323134-43323890 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-762 |
| Cow position: | chr29:7430643-7429837 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-803 |
| Cow position: | chr29:9643184-9642384 (view UCSC Genome Browser custom track) |
| Alignm length: | 825 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 172 |
| Conread position: | 1-816 |
| Cow position: | chr29:25931963-25931110 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 649 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 168 |
| Conread position: | 1-816 |
| Cow position: | chr29:40502403-40501582 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 630 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-825 |
| Cow position: | chr29:10647675-10646825 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 655 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 1-825 |
| Cow position: | chr29:45586787-45585975 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 147 |
| Conread position: | 1-830 |
| Cow position: | chr29:14586497-14587349 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 653 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 164 |
| Conread position: | 1-831 |
| Cow position: | chr29:2100426-2101270 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 635 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 1-831 |
| Cow position: | chr29:5958176-5959009 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 176 |
| Conread position: | 1-833 |
| Cow position: | chr29:21426449-21425587 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 1-833 |
| Cow position: | chr29:34799230-34798378 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 665 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 177 |
| Conread position: | 1-833 |
| Cow position: | chr29:39079131-39078278 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 666 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 175 |
| Conread position: | 1-833 |
| Cow position: | chr29:45460296-45461180 (view UCSC Genome Browser custom track) |
| Alignm length: | 891 |
| Alignm identity: | 666 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 2-833 |
| Cow position: | chr29:14085552-14084695 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 639 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 6-689 |
| Cow position: | chr29:669479-668780 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 170 |
| Conread position: | 6-718 |
| Cow position: | chr29:35297449-35298139 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 30 |
| Conread position: | 6-747 |
| Cow position: | chr29:34873414-34874160 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 5 |
| Conread position: | 6-784 |
| Cow position: | chr29:10823390-10822583 (view UCSC Genome Browser custom track) |
| Alignm length: | 811 |
| Alignm identity: | 619 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 63 |
| Conread position: | 6-816 |
| Cow position: | chr29:610037-609228 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 608 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 149 |
| Conread position: | 6-825 |
| Cow position: | chr29:5982132-5981283 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 631 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 6-825 |
| Cow position: | chr29:8664104-8664938 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 6-831 |
| Cow position: | chr29:13582641-13583512 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 626 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 188 |
| Conread position: | 6-831 |
| Cow position: | chr29:18856365-18855514 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 165 |
| Conread position: | 6-831 |
| Cow position: | chr29:27980345-27979489 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 6-831 |
| Cow position: | chr29:32559176-32558320 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 613 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 6-832 |
| Cow position: | chr29:251357-252170 (view UCSC Genome Browser custom track) |
| Alignm length: | 841 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 8-831 |
| Cow position: | chr29:31181985-31182839 (view UCSC Genome Browser custom track) |
| Alignm length: | 859 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 168 |
| Conread position: | 8-833 |
| Cow position: | chr29:32891389-32892212 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 607 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 9-833 |
| Cow position: | chr29:26164244-26163401 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 649 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 11-493 |
| Cow position: | chr29:2840793-2840283 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 165 |
| Conread position: | 11-752 |
| Cow position: | chr29:9620007-9620760 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 17-588 |
| Cow position: | chr29:35263288-35263846 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 17-644 |
| Cow position: | chr29:31024183-31023565 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 17-833 |
| Cow position: | chr29:38227569-38228411 (view UCSC Genome Browser custom track) |
| Alignm length: | 854 |
| Alignm identity: | 643 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 25-825 |
| Cow position: | chr29:20251763-20252584 (view UCSC Genome Browser custom track) |
| Alignm length: | 832 |
| Alignm identity: | 629 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 151 |
| Conread position: | 37-825 |
| Cow position: | chr29:35815365-35814546 (view UCSC Genome Browser custom track) |
| Alignm length: | 823 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 139 |
| Conread position: | 44-824 |
| Cow position: | chr29:6213144-6213937 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 53-670 |
| Cow position: | chr29:14210938-14210300 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 120 |
| Conread position: | 75-831 |
| Cow position: | chr29:7845033-7845821 (view UCSC Genome Browser custom track) |
| Alignm length: | 793 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 98 |
| Conread position: | 77-833 |
| Cow position: | chr29:23976776-23977556 (view UCSC Genome Browser custom track) |
| Alignm length: | 797 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 101-609 |
| Cow position: | chr29:37164816-37165341 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 351 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 107-816 |
| Cow position: | chr29:32540778-32541517 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 120-745 |
| Cow position: | chr29:42803114-42803765 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 133-798 |
| Cow position: | chr29:31096672-31095979 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 139-831 |
| Cow position: | chr29:646515-647245 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 146-825 |
| Cow position: | chr29:19622560-19621852 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 181-738 |
| Cow position: | chr29:43408863-43408314 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 377 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 228-833 |
| Cow position: | chr29:19654443-19655057 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 228-833 |
| Cow position: | chr29:45205314-45205944 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 191 |
| Conread position: | 252-825 |
| Cow position: | chr29:41475875-41475315 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 258-833 |
| Cow position: | chr29:14448750-14449312 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 263-833 |
| Cow position: | chr29:15997819-15997217 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 275-813 |
| Cow position: | chr29:2747573-2747037 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 275-833 |
| Cow position: | chr29:13650916-13651471 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 276-830 |
| Cow position: | chr29:31870421-31869859 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 351 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 285-675 |
| Cow position: | chr29:27263026-27262625 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 193 |
| Conread position: | 335-829 |
| Cow position: | chr29:15946889-15946390 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 358 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 94, 51 |
| Conread position: | 336-541 |
| Cow position: | chr29:8061195-8060987 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 337-438 |
| Cow position: | chr29:32641291-32641392 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 339-786 |
| Cow position: | chr29:47503-47030 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 340-823 |
| Cow position: | chr29:16023505-16023987 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 271 |
| Conread position: | 340-831 |
| Cow position: | chr29:13622910-13622427 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 174 |
| Conread position: | 342-831 |
| Cow position: | chr29:2465930-2465422 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 266 |
| Conread position: | 346-833 |
| Cow position: | chr29:2691116-2691596 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 23 |
| Conread position: | 385-831 |
| Cow position: | chr29:42939219-42938761 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 350 |
| Conread position: | 429-831 |
| Cow position: | chr29:38207646-38207233 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 434-831 |
| Cow position: | chr29:3328366-3328770 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 292 |
| Conread position: | 454-833 |
| Cow position: | chr29:2840287-2839909 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 461-833 |
| Cow position: | chr29:30259464-30259105 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 76 |
| Conread position: | 493-833 |
| Cow position: | chr29:5236108-5236454 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 517-831 |
| Cow position: | chr29:42092874-42093196 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 213 |
| Conread position: | 518-832 |
| Cow position: | chr29:21518246-21517933 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 561-832 |
| Cow position: | chr29:12793376-12793657 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 203 |
| Conread position: | 567-833 |
| Cow position: | chr29:36635220-36634939 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 119, 20 |
| Conread position: | 572-833 |
| Cow position: | chr29:6264827-6264567 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 122, 91 |
| Conread position: | 582-825 |
| Cow position: | chr29:16166418-16166170 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 38 |
| Conread position: | 626-824 |
| Cow position: | chr29:21431630-21431427 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 637-831 |
| Cow position: | chr29:6198520-6198322 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 639-831 |
| Cow position: | chr29:27180518-27180322 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 651-831 |
| Cow position: | chr29:10023085-10022901 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 72 |
Show alignments to all cow chromosomes.