Cow genome map

Conread name: Lng1-LNG010013G12

Conread position: 1-509
Cow position: chr4:18517196-18517727 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 174

Conread position: 1-509
Cow position: chr4:48026702-48027238 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 168

Conread position: 1-753
Cow position: chr4:41333010-41333767 (view UCSC Genome Browser custom track)
Alignm length: 779
Alignm identity: 585
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 174

Conread position: 1-816
Cow position: chr4:36896671-36897515 (view UCSC Genome Browser custom track)
Alignm length: 853
Alignm identity: 658
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 173

Conread position: 1-817
Cow position: chr4:33072524-33071685 (view UCSC Genome Browser custom track)
Alignm length: 850
Alignm identity: 641
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-822
Cow position: chr4:38126-37294 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 528
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 46, 90

Conread position: 1-824
Cow position: chr4:1367858-1367049 (view UCSC Genome Browser custom track)
Alignm length: 863
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 8

Conread position: 1-831
Cow position: chr4:17093568-17092712 (view UCSC Genome Browser custom track)
Alignm length: 864
Alignm identity: 630
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 42

Conread position: 1-833
Cow position: chr4:356205-357062 (view UCSC Genome Browser custom track)
Alignm length: 869
Alignm identity: 656
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 185

Conread position: 1-833
Cow position: chr4:6490066-6489200 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 170

Conread position: 1-833
Cow position: chr4:10881846-10882706 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 665
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 173

Conread position: 1-833
Cow position: chr4:12240912-12240068 (view UCSC Genome Browser custom track)
Alignm length: 856
Alignm identity: 642
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 139

Conread position: 1-833
Cow position: chr4:13493615-13494482 (view UCSC Genome Browser custom track)
Alignm length: 875
Alignm identity: 659
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 175

Conread position: 1-833
Cow position: chr4:31565005-31564131 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 668
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 173

Conread position: 1-833
Cow position: chr4:57984284-57985144 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 657
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 163

Conread position: 2-833
Cow position: chr4:60263862-60263005 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 654
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 171

Conread position: 5-806
Cow position: chr4:11837345-11836571 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 70

Conread position: 5-825
Cow position: chr4:13870317-13871127 (view UCSC Genome Browser custom track)
Alignm length: 847
Alignm identity: 580
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 32

Conread position: 5-833
Cow position: chr4:12587638-12588484 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 662
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 164

Conread position: 6-709
Cow position: chr4:27334010-27334740 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 174

Conread position: 6-753
Cow position: chr4:27301164-27300405 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 574
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 167

Conread position: 6-816
Cow position: chr4:5880467-5881298 (view UCSC Genome Browser custom track)
Alignm length: 836
Alignm identity: 604
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-819
Cow position: chr4:4416376-4417199 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 618
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 133

Conread position: 6-825
Cow position: chr4:1930323-1929491 (view UCSC Genome Browser custom track)
Alignm length: 839
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 110

Conread position: 6-830
Cow position: chr4:46664823-46665685 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 646
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 166

Conread position: 6-831
Cow position: chr4:159455-160309 (view UCSC Genome Browser custom track)
Alignm length: 868
Alignm identity: 636
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 174

Conread position: 6-831
Cow position: chr4:529701-530555 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 620
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 6-831
Cow position: chr4:3126097-3126960 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 631
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 44

Conread position: 6-831
Cow position: chr4:18424223-18423366 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 623
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 169

Conread position: 6-831
Cow position: chr4:32212469-32213319 (view UCSC Genome Browser custom track)
Alignm length: 862
Alignm identity: 621
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 170

Conread position: 6-833
Cow position: chr4:25599194-25598333 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 661
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 170

Conread position: 7-603
Cow position: chr4:39271077-39270481 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 63

Conread position: 7-833
Cow position: chr4:43319337-43318483 (view UCSC Genome Browser custom track)
Alignm length: 866
Alignm identity: 666
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 102

Conread position: 9-816
Cow position: chr4:33595862-33596669 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 572
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 33

Conread position: 9-825
Cow position: chr4:44925210-44924388 (view UCSC Genome Browser custom track)
Alignm length: 845
Alignm identity: 581
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 53

Conread position: 9-833
Cow position: chr4:43881410-43882262 (view UCSC Genome Browser custom track)
Alignm length: 861
Alignm identity: 655
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 167

Conread position: 20-833
Cow position: chr4:64984660-64985457 (view UCSC Genome Browser custom track)
Alignm length: 828
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 46

Conread position: 23-831
Cow position: chr4:18337182-18338004 (view UCSC Genome Browser custom track)
Alignm length: 840
Alignm identity: 598
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 152

Conread position: 50-810
Cow position: chr4:28831909-28832676 (view UCSC Genome Browser custom track)
Alignm length: 801
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 58

Conread position: 74-833
Cow position: chr4:494208-493466 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 99

Conread position: 77-833
Cow position: chr4:17925583-17924809 (view UCSC Genome Browser custom track)
Alignm length: 789
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 96

Conread position: 84-813
Cow position: chr4:11110891-11110145 (view UCSC Genome Browser custom track)
Alignm length: 775
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 373

Conread position: 106-833
Cow position: chr4:1049856-1049107 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 67

Conread position: 118-816
Cow position: chr4:44726013-44726717 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 51

Conread position: 118-833
Cow position: chr4:16360328-16361061 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 51

Conread position: 119-833
Cow position: chr4:67681609-67682349 (view UCSC Genome Browser custom track)
Alignm length: 749
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 54

Conread position: 120-832
Cow position: chr4:50975036-50975780 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 53

Conread position: 120-833
Cow position: chr4:22473771-22474503 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 54

Conread position: 128-615
Cow position: chr4:50984596-50985064 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 45

Conread position: 128-715
Cow position: chr4:27294863-27294266 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 44

Conread position: 138-824
Cow position: chr4:16639047-16639753 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 536
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 35

Conread position: 146-831
Cow position: chr4:5444392-5443675 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 27

Conread position: 178-831
Cow position: chr4:44780750-44780070 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 317

Conread position: 185-670
Cow position: chr4:16057161-16057671 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 97

Conread position: 194-816
Cow position: chr4:61713109-61712480 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 36

Conread position: 194-833
Cow position: chr4:50980993-50981639 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 427
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 67, 16

Conread position: 199-791
Cow position: chr4:10093406-10094017 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 247

Conread position: 217-662
Cow position: chr4:14775964-14776434 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 293

Conread position: 218-786
Cow position: chr4:45298562-45297992 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 299

Conread position: 229-585
Cow position: chr4:33494125-33494495 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 74

Conread position: 244-833
Cow position: chr4:52269229-52268627 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 389
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 193, 98

Conread position: 247-688
Cow position: chr4:6519325-6519767 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 288
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 61

Conread position: 258-826
Cow position: chr4:51042728-51042138 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 274

Conread position: 258-831
Cow position: chr4:30471795-30472363 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 480

Conread position: 264-505
Cow position: chr4:41958983-41959243 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 264-831
Cow position: chr4:41955322-41955913 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 417

Conread position: 268-831
Cow position: chr4:45106031-45106616 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 196

Conread position: 290-825
Cow position: chr4:13126198-13125663 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 363
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 149

Conread position: 290-832
Cow position: chr4:4177866-4178403 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 206

Conread position: 297-833
Cow position: chr4:54969322-54969868 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 199

Conread position: 302-833
Cow position: chr4:47462434-47462974 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 188

Conread position: 332-833
Cow position: chr4:69505150-69505631 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 315
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 53

Conread position: 336-780
Cow position: chr4:967427-966963 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 336-798
Cow position: chr4:14820218-14819756 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 101

Conread position: 336-832
Cow position: chr4:50806174-50806663 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 327
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 92, 39

Conread position: 341-833
Cow position: chr4:61693857-61693370 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 340
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 117, 99

Conread position: 343-833
Cow position: chr4:69521223-69521678 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 33

Conread position: 346-833
Cow position: chr4:28149098-28149565 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 165

Conread position: 348-831
Cow position: chr4:9847560-9847057 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 171

Conread position: 382-816
Cow position: chr4:34178540-34178100 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 280

Conread position: 386-816
Cow position: chr4:26877079-26876642 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 150

Conread position: 399-763
Cow position: chr4:49939859-49939487 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 113, 79

Conread position: 410-833
Cow position: chr4:2089125-2089549 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 278
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 28, 45

Conread position: 422-832
Cow position: chr4:63428271-63427871 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 275
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 259, 5

Conread position: 426-831
Cow position: chr4:99472-99068 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 291

Conread position: 434-833
Cow position: chr4:14755903-14755518 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 23, 81

Conread position: 445-830
Cow position: chr4:68110270-68109878 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 279

Conread position: 467-831
Cow position: chr4:42405390-42405762 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 115

Conread position: 467-833
Cow position: chr4:19005526-19005161 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 27

Conread position: 489-816
Cow position: chr4:6567193-6567519 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 72, 169

Conread position: 511-831
Cow position: chr4:41959725-41960050 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 214

Conread position: 525-831
Cow position: chr4:9647220-9647521 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 31, 10

Conread position: 533-832
Cow position: chr4:6615266-6614969 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 166, 33

Conread position: 555-831
Cow position: chr4:41191727-41191450 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 200

Conread position: 560-833
Cow position: chr4:57957877-57958142 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 157, 73

Conread position: 563-832
Cow position: chr4:41428193-41428463 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 78, 91

Conread position: 584-833
Cow position: chr4:39268245-39268002 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 18

Conread position: 596-825
Cow position: chr4:13958094-13958321 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 95, 20

Conread position: 600-831
Cow position: chr4:9355298-9355532 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 96, 46

Conread position: 627-833
Cow position: chr4:33494493-33494707 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 127

Conread position: 628-833
Cow position: chr4:47522304-47522514 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 70, 96

Show alignments to all cow chromosomes.