Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-137 |
| Cow position: | chr12:18021507-18021368 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-141 |
| Cow position: | chr12:3906385-3906239 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-141 |
| Cow position: | chr12:27562917-27563066 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-141 |
| Cow position: | chr12:34385601-34385742 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 1-143 |
| Cow position: | chr12:28748852-28748703 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 1-146 |
| Cow position: | chr12:8943308-8943455 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 1-146 |
| Cow position: | chr12:35218492-35218639 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-148 |
| Cow position: | chr12:3880340-3880492 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-148 |
| Cow position: | chr12:8868965-8869119 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-148 |
| Cow position: | chr12:18040684-18040827 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-148 |
| Cow position: | chr12:28650867-28650716 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 1-148 |
| Cow position: | chr12:42254579-42254422 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:19508653-19508811 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-151 |
| Cow position: | chr12:30753635-30753483 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 2-146 |
| Cow position: | chr12:37190224-37190083 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 102, 30 |
| Conread position: | 2-148 |
| Cow position: | chr12:3056043-3055901 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 2-148 |
| Cow position: | chr12:30662036-30662185 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 47, 73 |
| Conread position: | 3-148 |
| Cow position: | chr12:28804906-28804757 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 5-148 |
| Cow position: | chr12:6241220-6241073 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 7-140 |
| Cow position: | chr12:27563471-27563615 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 7-148 |
| Cow position: | chr12:29161907-29162047 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 7-148 |
| Cow position: | chr12:30728329-30728475 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 7-151 |
| Cow position: | chr12:25456025-25455875 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 8-148 |
| Cow position: | chr12:29483986-29484126 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 122, 89 |
| Conread position: | 8-151 |
| Cow position: | chr12:24180802-24180658 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 94 |
| Conread position: | 11-148 |
| Cow position: | chr12:5905956-5905821 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 17-148 |
| Cow position: | chr12:3076720-3076859 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 20-147 |
| Cow position: | chr12:26782781-26782646 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 20-148 |
| Cow position: | chr12:20316619-20316743 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 20-148 |
| Cow position: | chr12:31925542-31925414 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-148 |
| Cow position: | chr12:43476251-43476119 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 20-150 |
| Cow position: | chr12:24755133-24755263 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 22-148 |
| Cow position: | chr12:5459157-5459027 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 24-148 |
| Cow position: | chr12:17716967-17716847 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 27-148 |
| Cow position: | chr12:19124943-19125063 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 34-146 |
| Cow position: | chr12:37123390-37123278 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 35-148 |
| Cow position: | chr12:23574647-23574534 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 105-825 |
| Cow position: | chr12:9988455-9987756 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 20 |
| Conread position: | 133-825 |
| Cow position: | chr12:11582414-11583101 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 137-771 |
| Cow position: | chr12:23378387-23379017 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 139 |
| Conread position: | 137-825 |
| Cow position: | chr12:17981658-17982326 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 141-790 |
| Cow position: | chr12:35367667-35368284 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 146-825 |
| Cow position: | chr12:22517584-22516903 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 39 |
| Conread position: | 166-827 |
| Cow position: | chr12:21497608-21496965 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 186-825 |
| Cow position: | chr12:32917638-32918274 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 156 |
| Conread position: | 201-825 |
| Cow position: | chr12:5274041-5273424 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 150 |
| Conread position: | 211-599 |
| Cow position: | chr12:38774427-38774793 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 57 |
| Conread position: | 221-813 |
| Cow position: | chr12:21723456-21724070 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 67 |
| Conread position: | 231-816 |
| Cow position: | chr12:37698119-37697539 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 119 |
| Conread position: | 234-825 |
| Cow position: | chr12:28708266-28707680 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 263-462 |
| Cow position: | chr12:1058165-1057981 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 265-539 |
| Cow position: | chr12:18421837-18421563 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 66, 129 |
| Conread position: | 265-825 |
| Cow position: | chr12:20317350-20316811 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 51 |
| Conread position: | 341-606 |
| Cow position: | chr12:14811547-14811288 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 346-825 |
| Cow position: | chr12:35311466-35310978 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 347-827 |
| Cow position: | chr12:11082290-11082775 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 76 |
| Conread position: | 350-824 |
| Cow position: | chr12:27054818-27055301 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 350-825 |
| Cow position: | chr12:62683-63160 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 353-795 |
| Cow position: | chr12:1345598-1346019 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 362-825 |
| Cow position: | chr12:34514409-34513943 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 363-825 |
| Cow position: | chr12:1006591-1006134 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 60 |
| Conread position: | 380-709 |
| Cow position: | chr12:5898261-5898580 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 43 |
Show alignments to all cow chromosomes.