Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-113 |
| Cow position: | chr13:13238613-13238725 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-126 |
| Cow position: | chr13:5447570-5447692 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-135 |
| Cow position: | chr13:7790050-7790184 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-137 |
| Cow position: | chr13:15110354-15110496 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-138 |
| Cow position: | chr13:4420379-4420520 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-141 |
| Cow position: | chr13:34375302-34375445 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 132 |
| Conread position: | 1-142 |
| Cow position: | chr13:20264879-20264734 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-145 |
| Cow position: | chr13:48251951-48251812 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-146 |
| Cow position: | chr13:1155669-1155527 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-146 |
| Cow position: | chr13:34556302-34556152 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-146 |
| Cow position: | chr13:51015152-51014999 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-147 |
| Cow position: | chr13:15041439-15041290 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-147 |
| Cow position: | chr13:54237389-54237528 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:563108-562955 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 1-148 |
| Cow position: | chr13:1042931-1042773 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 69 |
| Conread position: | 1-148 |
| Cow position: | chr13:8201448-8201303 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:13338892-13339047 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:15869157-15869302 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:18243896-18244039 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 1-148 |
| Cow position: | chr13:19178309-19178459 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-148 |
| Cow position: | chr13:20563030-20563180 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr13:20649949-20649800 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 112 |
| Conread position: | 1-148 |
| Cow position: | chr13:20814246-20814097 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 1-148 |
| Cow position: | chr13:20816347-20816496 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 31 |
| Conread position: | 1-148 |
| Cow position: | chr13:21904698-21904845 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 1-148 |
| Cow position: | chr13:24230244-24230396 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:33256536-33256679 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 1-148 |
| Cow position: | chr13:34507911-34508059 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 1-148 |
| Cow position: | chr13:40651969-40652116 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:42114053-42114204 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr13:47186259-47186407 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 1-148 |
| Cow position: | chr13:60690692-60690539 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 1-148 |
| Cow position: | chr13:60974117-60974261 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-151 |
| Cow position: | chr13:30651212-30651361 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 1-167 |
| Cow position: | chr13:14771490-14771661 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 2-148 |
| Cow position: | chr13:9884804-9884951 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 107, 65 |
| Conread position: | 5-141 |
| Cow position: | chr13:11460664-11460801 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 60 |
| Conread position: | 5-147 |
| Cow position: | chr13:19188339-19188486 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 5-148 |
| Cow position: | chr13:18551483-18551631 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 5-148 |
| Cow position: | chr13:19023804-19023657 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 6-148 |
| Cow position: | chr13:20536540-20536683 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 7-141 |
| Cow position: | chr13:607227-607085 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 7-146 |
| Cow position: | chr13:61170680-61170534 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 7-147 |
| Cow position: | chr13:56431859-56431723 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-148 |
| Cow position: | chr13:17613384-17613529 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-148 |
| Cow position: | chr13:37517096-37516953 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 7-148 |
| Cow position: | chr13:51821849-51821709 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 62 |
| Conread position: | 8-148 |
| Cow position: | chr13:20041926-20041778 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 14-146 |
| Cow position: | chr13:56605425-56605289 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 14-148 |
| Cow position: | chr13:17993977-17994109 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 17-148 |
| Cow position: | chr13:4037930-4038063 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 20-162 |
| Cow position: | chr13:26901268-26901407 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 24-148 |
| Cow position: | chr13:33517865-33517741 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-148 |
| Cow position: | chr13:8195151-8195265 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-825 |
| Cow position: | chr13:20538497-20537835 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 134-406 |
| Cow position: | chr13:47189064-47189330 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 137-406 |
| Cow position: | chr13:19843521-19843783 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 75, 127 |
| Conread position: | 137-541 |
| Cow position: | chr13:38897369-38897752 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 34 |
| Conread position: | 137-824 |
| Cow position: | chr13:38013605-38012925 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 180 |
| Conread position: | 137-825 |
| Cow position: | chr13:42114942-42114273 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 145-824 |
| Cow position: | chr13:26823072-26822382 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 220 |
| Conread position: | 145-825 |
| Cow position: | chr13:60967719-60967042 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 206 |
| Conread position: | 145-827 |
| Cow position: | chr13:20563922-20563248 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 146-825 |
| Cow position: | chr13:644994-645663 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 196 |
| Conread position: | 146-825 |
| Cow position: | chr13:16807650-16808321 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 155 |
| Conread position: | 147-827 |
| Cow position: | chr13:50190010-50189332 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 151-826 |
| Cow position: | chr13:34051688-34052351 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 165-423 |
| Cow position: | chr13:2314734-2314477 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 165-814 |
| Cow position: | chr13:36346902-36346251 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 89 |
| Conread position: | 166-827 |
| Cow position: | chr13:21108031-21107380 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 175-823 |
| Cow position: | chr13:46737094-46736478 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 185-676 |
| Cow position: | chr13:43120189-43119689 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 194-606 |
| Cow position: | chr13:51332185-51332592 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 158 |
| Conread position: | 207-423 |
| Cow position: | chr13:19322372-19322159 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 263-529 |
| Cow position: | chr13:20176081-20175831 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 212, 75 |
| Conread position: | 263-823 |
| Cow position: | chr13:26098951-26098396 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 88 |
| Conread position: | 263-825 |
| Cow position: | chr13:1154904-1155456 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 283-815 |
| Cow position: | chr13:34728054-34728578 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 64 |
| Conread position: | 306-827 |
| Cow position: | chr13:15622619-15622109 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 44 |
| Conread position: | 308-778 |
| Cow position: | chr13:44205821-44205352 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 23 |
| Conread position: | 330-819 |
| Cow position: | chr13:46182529-46182033 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 342-814 |
| Cow position: | chr13:12616482-12616016 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 343-489 |
| Cow position: | chr13:37979803-37979949 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 348-827 |
| Cow position: | chr13:47215514-47216003 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 353-825 |
| Cow position: | chr13:42215852-42215379 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 71 |
Show alignments to all cow chromosomes.