Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-109 |
| Cow position: | chr14:8936559-8936447 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-141 |
| Cow position: | chr14:33828252-33828385 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 1-144 |
| Cow position: | chr14:14949121-14948973 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-145 |
| Cow position: | chr14:20301920-20301769 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-146 |
| Cow position: | chr14:46735396-46735551 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-147 |
| Cow position: | chr14:21964210-21964360 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-147 |
| Cow position: | chr14:22952902-22952758 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 1-148 |
| Cow position: | chr14:106485-106334 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 1-148 |
| Cow position: | chr14:11508153-11508002 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-148 |
| Cow position: | chr14:11810479-11810329 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 63, 138 |
| Conread position: | 1-148 |
| Cow position: | chr14:19863341-19863199 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 69, 91 |
| Conread position: | 1-148 |
| Cow position: | chr14:21284715-21284871 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-148 |
| Cow position: | chr14:22966844-22966993 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 1-148 |
| Cow position: | chr14:26470719-26470870 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-148 |
| Cow position: | chr14:28090884-28090731 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 1-148 |
| Cow position: | chr14:33538831-33538685 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 1-148 |
| Cow position: | chr14:35381682-35381829 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 1-148 |
| Cow position: | chr14:36437393-36437245 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 74 |
| Conread position: | 1-148 |
| Cow position: | chr14:38144017-38143872 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-148 |
| Cow position: | chr14:39422500-39422347 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 141 |
| Conread position: | 1-148 |
| Cow position: | chr14:41127986-41128134 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 1-150 |
| Cow position: | chr14:27312518-27312667 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-151 |
| Cow position: | chr14:3564373-3564519 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 1-151 |
| Cow position: | chr14:40230547-40230393 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 2-151 |
| Cow position: | chr14:15913455-15913307 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 5-146 |
| Cow position: | chr14:12324516-12324663 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 5-148 |
| Cow position: | chr14:37103307-37103451 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-118 |
| Cow position: | chr14:14417398-14417286 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 7-148 |
| Cow position: | chr14:14466379-14466238 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-148 |
| Cow position: | chr14:19129607-19129752 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 7-148 |
| Cow position: | chr14:22381454-22381314 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 7-148 |
| Cow position: | chr14:27919640-27919497 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 7-148 |
| Cow position: | chr14:28115088-28114942 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 37, 62 |
| Conread position: | 7-148 |
| Cow position: | chr14:36555060-36554911 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-148 |
| Cow position: | chr14:44237608-44237459 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 8-151 |
| Cow position: | chr14:24893855-24894004 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 12-148 |
| Cow position: | chr14:37108805-37108671 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 14-148 |
| Cow position: | chr14:11043385-11043249 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 14-148 |
| Cow position: | chr14:24922206-24922347 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 14-148 |
| Cow position: | chr14:41479558-41479418 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 16-151 |
| Cow position: | chr14:50504244-50504105 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 17-124 |
| Cow position: | chr14:27157395-27157288 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-148 |
| Cow position: | chr14:6490598-6490463 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 17-148 |
| Cow position: | chr14:28795782-28795917 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 20-148 |
| Cow position: | chr14:43249690-43249826 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 21-148 |
| Cow position: | chr14:4649902-4649775 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-148 |
| Cow position: | chr14:19996428-19996559 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 24-146 |
| Cow position: | chr14:33209237-33209120 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 24-148 |
| Cow position: | chr14:12667844-12667973 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 24-148 |
| Cow position: | chr14:13634591-13634465 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 8 |
| Conread position: | 31-151 |
| Cow position: | chr14:15424325-15424201 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 32-148 |
| Cow position: | chr14:47609466-47609346 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 108-825 |
| Cow position: | chr14:45739429-45738722 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 16 |
| Conread position: | 133-620 |
| Cow position: | chr14:424101-424575 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 133-826 |
| Cow position: | chr14:45583229-45583891 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 133-827 |
| Cow position: | chr14:11564454-11565150 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 8 |
| Conread position: | 133-827 |
| Cow position: | chr14:26496855-26496170 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 163 |
| Conread position: | 137-532 |
| Cow position: | chr14:5500855-5501235 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 137-533 |
| Cow position: | chr14:39822161-39821768 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 94 |
| Conread position: | 137-825 |
| Cow position: | chr14:12545588-12546279 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 138-819 |
| Cow position: | chr14:13581790-13582456 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 544 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 227 |
| Conread position: | 142-481 |
| Cow position: | chr14:38459228-38458905 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 146-466 |
| Cow position: | chr14:50142094-50141781 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 205 |
| Conread position: | 146-827 |
| Cow position: | chr14:46489282-46489948 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 200 |
| Conread position: | 150-725 |
| Cow position: | chr14:33772909-33773475 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 150-750 |
| Cow position: | chr14:43564392-43564989 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 150 |
| Conread position: | 150-826 |
| Cow position: | chr14:35382555-35381897 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 29 |
| Conread position: | 152-533 |
| Cow position: | chr14:40462725-40462333 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 158 |
| Conread position: | 152-669 |
| Cow position: | chr14:50121961-50122474 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 186 |
| Conread position: | 152-825 |
| Cow position: | chr14:40346195-40346868 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 208 |
| Conread position: | 165-827 |
| Cow position: | chr14:12483350-12484003 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 166-522 |
| Cow position: | chr14:10820192-10820550 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 169-827 |
| Cow position: | chr14:12243432-12244078 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 221-406 |
| Cow position: | chr14:41401436-41401620 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 18, 130 |
| Conread position: | 223-555 |
| Cow position: | chr14:30760029-30759720 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 161, 15 |
| Conread position: | 232-649 |
| Cow position: | chr14:41757176-41756768 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 129 |
| Conread position: | 263-466 |
| Cow position: | chr14:1788644-1788836 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 267-827 |
| Cow position: | chr14:21596749-21597306 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 80 |
| Conread position: | 341-824 |
| Cow position: | chr14:48400548-48400082 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 338 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 344-824 |
| Cow position: | chr14:3125913-3126389 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 67 |
| Conread position: | 346-815 |
| Cow position: | chr14:19654176-19654643 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 81 |
| Conread position: | 380-823 |
| Cow position: | chr14:24417638-24417196 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 43 |
Show alignments to all cow chromosomes.