Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-121
Cow position: chr16:52133562-52133686 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 1-133
Cow position: chr16:53048504-53048368 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 1-141
Cow position: chr16:3821490-3821342 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 1-141
Cow position: chr16:44973446-44973304 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 69

Conread position: 1-145
Cow position: chr16:49169434-49169578 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 115

Conread position: 1-146
Cow position: chr16:26501107-26500964 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 85

Conread position: 1-148
Cow position: chr16:4910576-4910729 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 1-148
Cow position: chr16:5654461-5654310 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 105, 0

Conread position: 1-148
Cow position: chr16:5726873-5726728 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 69

Conread position: 1-148
Cow position: chr16:7152221-7152371 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 62

Conread position: 1-148
Cow position: chr16:7665587-7665433 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 1-148
Cow position: chr16:14361057-14360906 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr16:17745784-17745637 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 73

Conread position: 1-148
Cow position: chr16:26610589-26610435 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 23

Conread position: 1-148
Cow position: chr16:31159621-31159776 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 63

Conread position: 1-148
Cow position: chr16:32132476-32132330 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 48, 69

Conread position: 1-148
Cow position: chr16:35188205-35188056 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 64

Conread position: 1-148
Cow position: chr16:42969977-42970129 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 1-148
Cow position: chr16:53553764-53553915 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 1-152
Cow position: chr16:37452665-37452820 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 1-166
Cow position: chr16:56787825-56787991 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 83

Conread position: 2-147
Cow position: chr16:47662663-47662516 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 69

Conread position: 2-148
Cow position: chr16:11775099-11775248 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 69

Conread position: 3-148
Cow position: chr16:28694685-28694543 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 5-135
Cow position: chr16:22808606-22808736 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 103

Conread position: 5-144
Cow position: chr16:14568537-14568679 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 62

Conread position: 5-146
Cow position: chr16:52889463-52889606 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 37, 53

Conread position: 5-151
Cow position: chr16:31978238-31978389 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 7-113
Cow position: chr16:9136121-9136013 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 63

Conread position: 7-139
Cow position: chr16:21369428-21369291 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 7-140
Cow position: chr16:39417173-39417307 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 7-147
Cow position: chr16:5293603-5293465 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 101, 14

Conread position: 7-148
Cow position: chr16:10148225-10148083 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 115

Conread position: 7-148
Cow position: chr16:10462574-10462715 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 76

Conread position: 7-148
Cow position: chr16:20476482-20476338 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 40, 79

Conread position: 7-148
Cow position: chr16:29380201-29380056 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 7-148
Cow position: chr16:32327595-32327454 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 7-148
Cow position: chr16:45603618-45603481 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 7-148
Cow position: chr16:56845949-56846095 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 8-148
Cow position: chr16:11620864-11621001 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 8-151
Cow position: chr16:42242172-42242320 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 62

Conread position: 12-148
Cow position: chr16:45813763-45813899 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 72

Conread position: 14-126
Cow position: chr16:30910555-30910444 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 14-145
Cow position: chr16:7077807-7077938 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 14-148
Cow position: chr16:594289-594427 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 14-148
Cow position: chr16:30290257-30290118 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 14-148
Cow position: chr16:35343532-35343674 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 14-148
Cow position: chr16:50383139-50383004 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 17-150
Cow position: chr16:5351899-5352032 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 19-146
Cow position: chr16:22868240-22868371 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 20-148
Cow position: chr16:11425206-11425338 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 0

Conread position: 20-148
Cow position: chr16:16552496-16552364 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 20-150
Cow position: chr16:14758665-14758530 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 51

Conread position: 21-148
Cow position: chr16:35195672-35195809 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 24-148
Cow position: chr16:24672427-24672559 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 24-150
Cow position: chr16:53086403-53086525 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 23, 44

Conread position: 51-148
Cow position: chr16:11099898-11099995 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 81
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 115-640
Cow position: chr16:37058459-37057917 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 134

Conread position: 133-827
Cow position: chr16:45534034-45534719 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 219

Conread position: 134-799
Cow position: chr16:5747530-5746865 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 59

Conread position: 136-817
Cow position: chr16:15369572-15370226 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 43

Conread position: 136-824
Cow position: chr16:29158195-29158864 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 18

Conread position: 137-396
Cow position: chr16:41804869-41804615 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 75

Conread position: 137-406
Cow position: chr16:39456966-39457232 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 101

Conread position: 137-425
Cow position: chr16:23065586-23065864 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 14, 33

Conread position: 137-455
Cow position: chr16:4972948-4972635 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 213

Conread position: 137-645
Cow position: chr16:1958150-1957658 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 215

Conread position: 137-755
Cow position: chr16:25088186-25088835 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 178

Conread position: 138-466
Cow position: chr16:7541063-7541380 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 141-815
Cow position: chr16:29036459-29037126 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 29

Conread position: 142-823
Cow position: chr16:13422340-13421663 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 38

Conread position: 145-823
Cow position: chr16:52526816-52527491 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 206

Conread position: 146-825
Cow position: chr16:2724638-2723960 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 152-824
Cow position: chr16:5895035-5895687 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 100

Conread position: 159-763
Cow position: chr16:28022467-28021864 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 45

Conread position: 160-574
Cow position: chr16:43844377-43843964 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 281
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 50, 79

Conread position: 161-819
Cow position: chr16:11007307-11007989 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 162-827
Cow position: chr16:24876352-24875706 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 17

Conread position: 170-500
Cow position: chr16:25168836-25169160 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 243
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 17, 161

Conread position: 182-822
Cow position: chr16:55150952-55151578 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 158

Conread position: 184-650
Cow position: chr16:26671504-26671051 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 98

Conread position: 186-824
Cow position: chr16:14757814-14758445 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 98

Conread position: 196-827
Cow position: chr16:18948724-18949355 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 32

Conread position: 207-825
Cow position: chr16:4080207-4080815 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 50

Conread position: 236-421
Cow position: chr16:53548418-53548232 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 33, 115

Conread position: 244-671
Cow position: chr16:52760981-52761386 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 290
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 97

Conread position: 263-781
Cow position: chr16:45158265-45157747 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 5

Conread position: 264-743
Cow position: chr16:47518017-47518498 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 73

Conread position: 265-811
Cow position: chr16:32838361-32837819 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 83

Conread position: 268-827
Cow position: chr16:46552006-46552542 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 24

Conread position: 286-676
Cow position: chr16:16596465-16596850 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 30

Conread position: 295-649
Cow position: chr16:47335966-47336343 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 347

Conread position: 300-815
Cow position: chr16:24974709-24974209 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 47

Conread position: 320-606
Cow position: chr16:30574356-30574075 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 48, 107

Conread position: 324-606
Cow position: chr16:7395848-7395566 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 203
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 12, 100

Conread position: 326-510
Cow position: chr16:13716002-13715822 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 61

Conread position: 339-858
Cow position: chr16:12720036-12719535 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 20

Conread position: 342-816
Cow position: chr16:11054753-11055223 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 17

Conread position: 345-525
Cow position: chr16:37454552-37454374 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 12, 81

Show alignments to all cow chromosomes.