Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-100 |
| Cow position: | chr17:9936048-9936146 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 1-104 |
| Cow position: | chr17:11215240-11215342 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-124 |
| Cow position: | chr17:14060783-14060909 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 63 |
| Conread position: | 1-125 |
| Cow position: | chr17:26233836-26233964 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-137 |
| Cow position: | chr17:6329105-6328962 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-137 |
| Cow position: | chr17:14003809-14003671 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-146 |
| Cow position: | chr17:7132459-7132610 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-146 |
| Cow position: | chr17:21312819-21312960 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 1-146 |
| Cow position: | chr17:26183214-26183067 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 1-146 |
| Cow position: | chr17:37163529-37163682 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-147 |
| Cow position: | chr17:26230942-26230783 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:979164-979310 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 58, 108 |
| Conread position: | 1-148 |
| Cow position: | chr17:1035606-1035758 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:1295578-1295728 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 1-148 |
| Cow position: | chr17:5246883-5246738 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:8079308-8079157 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 1-148 |
| Cow position: | chr17:20993048-20993196 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 1-148 |
| Cow position: | chr17:21738884-21739041 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:23337025-23337170 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:24149175-24149020 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr17:35311418-35311264 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-160 |
| Cow position: | chr17:38613238-38613077 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 56 |
| Conread position: | 2-148 |
| Cow position: | chr17:22032700-22032851 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 2-148 |
| Cow position: | chr17:40771827-40771673 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 2-149 |
| Cow position: | chr17:8690451-8690598 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 2-150 |
| Cow position: | chr17:21017787-21017635 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 5-126 |
| Cow position: | chr17:31581471-31581350 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-146 |
| Cow position: | chr17:24077391-24077246 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 44, 59 |
| Conread position: | 5-151 |
| Cow position: | chr17:1256515-1256664 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 5-157 |
| Cow position: | chr17:267597-267750 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 7-125 |
| Cow position: | chr17:33999063-33999178 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 7-148 |
| Cow position: | chr17:34595926-34595782 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 7-151 |
| Cow position: | chr17:32554039-32554186 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 7-156 |
| Cow position: | chr17:7698039-7697887 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 59 |
| Conread position: | 8-151 |
| Cow position: | chr17:13244056-13244191 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 14-147 |
| Cow position: | chr17:31701421-31701281 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 14-148 |
| Cow position: | chr17:7142844-7142707 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 14-148 |
| Cow position: | chr17:27679258-27679401 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 17-151 |
| Cow position: | chr17:11618561-11618420 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 20-148 |
| Cow position: | chr17:10446891-10446759 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 27-148 |
| Cow position: | chr17:3258457-3258339 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 31-148 |
| Cow position: | chr17:13409392-13409512 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 137-818 |
| Cow position: | chr17:29156509-29157197 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 295 |
| Conread position: | 137-824 |
| Cow position: | chr17:12290350-12289646 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 307 |
| Conread position: | 137-845 |
| Cow position: | chr17:8449849-8450545 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 138-655 |
| Cow position: | chr17:2839160-2839678 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 138 |
| Conread position: | 145-473 |
| Cow position: | chr17:14249963-14249642 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 214 |
| Conread position: | 145-660 |
| Cow position: | chr17:22774315-22773801 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 145-815 |
| Cow position: | chr17:36266122-36265469 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 147-423 |
| Cow position: | chr17:38829029-38829302 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 157-423 |
| Cow position: | chr17:20083275-20083015 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 166-410 |
| Cow position: | chr17:16416914-16416665 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 49, 163 |
| Conread position: | 174-509 |
| Cow position: | chr17:11775589-11775916 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 174-822 |
| Cow position: | chr17:3197455-3196815 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 6 |
| Conread position: | 190-784 |
| Cow position: | chr17:41014358-41014944 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 207-825 |
| Cow position: | chr17:5748634-5748026 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 216-813 |
| Cow position: | chr17:2033709-2034312 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 126 |
| Conread position: | 222-464 |
| Cow position: | chr17:22151020-22151254 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 318-548 |
| Cow position: | chr17:18721328-18721101 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 342-827 |
| Cow position: | chr17:8996093-8995611 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 82 |
| Conread position: | 348-827 |
| Cow position: | chr17:40393322-40393804 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 350-825 |
| Cow position: | chr17:11786271-11786748 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 75 |
| Conread position: | 354-531 |
| Cow position: | chr17:20405032-20405204 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 25, 70 |
Show alignments to all cow chromosomes.