Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-118 |
| Cow position: | chr18:4648825-4648944 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 1-135 |
| Cow position: | chr18:36445357-36445221 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-147 |
| Cow position: | chr18:4625814-4625666 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 35 |
| Conread position: | 1-147 |
| Cow position: | chr18:49200562-49200411 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1-148 |
| Cow position: | chr18:5647166-5647016 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 1-148 |
| Cow position: | chr18:11233351-11233201 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-148 |
| Cow position: | chr18:13359982-13359830 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 1-148 |
| Cow position: | chr18:33606549-33606402 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 120 |
| Conread position: | 1-148 |
| Cow position: | chr18:43823032-43823183 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-150 |
| Cow position: | chr18:20174211-20174362 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 1-150 |
| Cow position: | chr18:40759124-40758983 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-164 |
| Cow position: | chr18:42455109-42455269 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 5-144 |
| Cow position: | chr18:4182275-4182418 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 5-148 |
| Cow position: | chr18:3098404-3098544 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 5-148 |
| Cow position: | chr18:56159375-56159234 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 5-188 |
| Cow position: | chr18:35908538-35908354 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 6-135 |
| Cow position: | chr18:5189775-5189909 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 7-147 |
| Cow position: | chr18:29796513-29796653 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 7-148 |
| Cow position: | chr18:11166892-11166749 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 7-148 |
| Cow position: | chr18:17649830-17649966 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 7-148 |
| Cow position: | chr18:49161531-49161686 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 8-137 |
| Cow position: | chr18:7947299-7947166 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 9-141 |
| Cow position: | chr18:14085368-14085238 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 12-148 |
| Cow position: | chr18:23447174-23447312 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 14-148 |
| Cow position: | chr18:51827194-51827065 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 19-148 |
| Cow position: | chr18:17005157-17005020 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 20-147 |
| Cow position: | chr18:9029520-9029389 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 20-148 |
| Cow position: | chr18:5457367-5457491 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 20-148 |
| Cow position: | chr18:7966157-7966032 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 107 |
| Conread position: | 27-148 |
| Cow position: | chr18:43020500-43020620 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 35-136 |
| Cow position: | chr18:4832765-4832866 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-824 |
| Cow position: | chr18:27193832-27194543 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 557 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 15 |
| Conread position: | 119-820 |
| Cow position: | chr18:54629820-54629101 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 122 |
| Conread position: | 133-391 |
| Cow position: | chr18:45905518-45905255 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 133-661 |
| Cow position: | chr18:20150962-20151475 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 133-702 |
| Cow position: | chr18:33850885-33851459 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 133-715 |
| Cow position: | chr18:33607590-33608166 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 133-805 |
| Cow position: | chr18:16390851-16390200 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 136-827 |
| Cow position: | chr18:35013291-35012603 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 199 |
| Conread position: | 137-520 |
| Cow position: | chr18:44261427-44261792 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 137-576 |
| Cow position: | chr18:41208307-41208728 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 137-815 |
| Cow position: | chr18:29059461-29058801 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 137-835 |
| Cow position: | chr18:33406667-33407332 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 179 |
| Conread position: | 138-823 |
| Cow position: | chr18:39002764-39002096 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 103 |
| Conread position: | 164-382 |
| Cow position: | chr18:7953030-7953247 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 12, 178 |
| Conread position: | 164-827 |
| Cow position: | chr18:7649040-7649695 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 165-671 |
| Cow position: | chr18:3081561-3081069 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 165-815 |
| Cow position: | chr18:32280358-32280985 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 170-825 |
| Cow position: | chr18:36477174-36477853 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 211-819 |
| Cow position: | chr18:39279896-39279309 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 117 |
| Conread position: | 217-821 |
| Cow position: | chr18:42746664-42747284 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 217 |
| Conread position: | 223-818 |
| Cow position: | chr18:36233428-36232837 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 150 |
| Conread position: | 263-819 |
| Cow position: | chr18:18860685-18861259 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 213 |
| Conread position: | 304-825 |
| Cow position: | chr18:2609539-2609032 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 306-827 |
| Cow position: | chr18:43563415-43563931 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 53 |
| Conread position: | 307-825 |
| Cow position: | chr18:1955346-1954823 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 334-746 |
| Cow position: | chr18:16471659-16471247 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 92 |
| Conread position: | 338-819 |
| Cow position: | chr18:8988554-8989044 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 339-652 |
| Cow position: | chr18:29078653-29078971 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 341-795 |
| Cow position: | chr18:871014-871476 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 341-827 |
| Cow position: | chr18:31587463-31586986 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 345-796 |
| Cow position: | chr18:43066454-43066907 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 345-825 |
| Cow position: | chr18:43075478-43075963 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 346-832 |
| Cow position: | chr18:4858670-4858185 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 78 |
| Conread position: | 348-827 |
| Cow position: | chr18:23617428-23616949 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 353-654 |
| Cow position: | chr18:38794543-38794832 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 362-674 |
| Cow position: | chr18:23466336-23466031 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 372-799 |
| Cow position: | chr18:28793837-28793400 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 387-676 |
| Cow position: | chr18:27077912-27078194 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 35 |
Show alignments to all cow chromosomes.