Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-118
Cow position: chr20:9433579-9433463 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 67

Conread position: 1-140
Cow position: chr20:14735669-14735529 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 68

Conread position: 1-140
Cow position: chr20:41089801-41089941 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 60

Conread position: 1-141
Cow position: chr20:9537130-9536986 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 1-141
Cow position: chr20:21714749-21714605 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 127

Conread position: 1-141
Cow position: chr20:30817528-30817389 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 107

Conread position: 1-144
Cow position: chr20:5269079-5269220 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 118, 69

Conread position: 1-144
Cow position: chr20:23064837-23064980 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 70

Conread position: 1-145
Cow position: chr20:5024952-5025095 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 86

Conread position: 1-145
Cow position: chr20:17904153-17904008 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 68

Conread position: 1-146
Cow position: chr20:18551356-18551209 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 35

Conread position: 1-148
Cow position: chr20:282933-283084 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 102, 0

Conread position: 1-148
Cow position: chr20:5025311-5025457 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 86

Conread position: 1-148
Cow position: chr20:7442134-7442278 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 117

Conread position: 1-148
Cow position: chr20:7659225-7659370 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 90

Conread position: 1-148
Cow position: chr20:9014352-9014503 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 1-148
Cow position: chr20:9379403-9379254 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 69

Conread position: 1-148
Cow position: chr20:9473621-9473769 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 43, 85

Conread position: 1-148
Cow position: chr20:13967266-13967413 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr20:17251709-17251553 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 145

Conread position: 1-148
Cow position: chr20:17733781-17733933 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 70

Conread position: 1-148
Cow position: chr20:19328395-19328244 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 84

Conread position: 1-148
Cow position: chr20:19410371-19410524 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 48, 70

Conread position: 1-148
Cow position: chr20:24391973-24391825 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 47

Conread position: 1-148
Cow position: chr20:28831962-28831808 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 69

Conread position: 1-148
Cow position: chr20:35907058-35907202 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 69

Conread position: 2-133
Cow position: chr20:3569074-3569204 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 5-108
Cow position: chr20:13794976-13794874 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 5-146
Cow position: chr20:13994803-13994656 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 124
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 60

Conread position: 5-148
Cow position: chr20:15582048-15582191 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 6-148
Cow position: chr20:14572371-14572511 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 54, 85

Conread position: 7-148
Cow position: chr20:12996023-12996163 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 64

Conread position: 7-148
Cow position: chr20:31927468-31927613 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 7-150
Cow position: chr20:10884370-10884523 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 8-141
Cow position: chr20:36010782-36010641 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 8-147
Cow position: chr20:15565839-15565985 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 14-148
Cow position: chr20:11864150-11864291 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 15-142
Cow position: chr20:30710665-30710799 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 33, 56

Conread position: 17-148
Cow position: chr20:10913355-10913490 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 20-146
Cow position: chr20:12420645-12420774 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 48

Conread position: 20-148
Cow position: chr20:3740023-3740155 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 20-148
Cow position: chr20:9701602-9701730 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 50

Conread position: 26-148
Cow position: chr20:35176803-35176925 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 80, 10

Conread position: 40-148
Cow position: chr20:12784150-12784042 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 110-825
Cow position: chr20:5503442-5502724 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 16

Conread position: 130-786
Cow position: chr20:6476828-6477471 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 118

Conread position: 133-448
Cow position: chr20:13050233-13049910 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 117

Conread position: 136-825
Cow position: chr20:18490275-18490969 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 18

Conread position: 137-659
Cow position: chr20:3468710-3469220 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 129

Conread position: 137-704
Cow position: chr20:28956623-28956051 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 279

Conread position: 137-825
Cow position: chr20:11454273-11453578 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 6

Conread position: 141-791
Cow position: chr20:10405027-10405680 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 210

Conread position: 148-427
Cow position: chr20:14756926-14756638 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 214

Conread position: 150-464
Cow position: chr20:7512598-7512291 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 85

Conread position: 154-814
Cow position: chr20:20779440-20778778 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 198

Conread position: 159-825
Cow position: chr20:13575199-13574529 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 164-825
Cow position: chr20:12996887-12996233 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 138

Conread position: 166-695
Cow position: chr20:5795132-5795648 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 166-771
Cow position: chr20:24831918-24831326 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 395
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 24

Conread position: 172-827
Cow position: chr20:5077314-5077974 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 173

Conread position: 192-815
Cow position: chr20:16942255-16941653 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 158

Conread position: 206-423
Cow position: chr20:16158204-16157990 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 127

Conread position: 222-427
Cow position: chr20:15436618-15436822 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 39, 128

Conread position: 233-741
Cow position: chr20:12553132-12552645 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 69

Conread position: 263-582
Cow position: chr20:38123181-38123501 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 166

Conread position: 290-709
Cow position: chr20:5785859-5786272 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 57

Conread position: 290-827
Cow position: chr20:21324359-21324892 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 10

Conread position: 292-628
Cow position: chr20:12241637-12241299 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 55

Conread position: 309-520
Cow position: chr20:22921200-22920993 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 72, 38

Conread position: 327-824
Cow position: chr20:14740819-14740322 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 106

Conread position: 339-825
Cow position: chr20:35145301-35145783 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 22

Conread position: 342-774
Cow position: chr20:29318712-29319146 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 10

Conread position: 347-827
Cow position: chr20:13771203-13771689 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 333
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 35, 22

Conread position: 354-640
Cow position: chr20:3034435-3034719 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 392-589
Cow position: chr20:4643840-4644038 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 86, 186

Show alignments to all cow chromosomes.