Cow genome map

Conread name: Lng1-LNG010014A07

Conread position: 1-106
Cow position: chr21:15200817-15200712 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-108
Cow position: chr21:22121532-22121428 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 1-126
Cow position: chr21:24094734-24094863 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 127

Conread position: 1-136
Cow position: chr21:33419709-33419839 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 24

Conread position: 1-144
Cow position: chr21:1483505-1483359 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 26

Conread position: 1-144
Cow position: chr21:31253558-31253412 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 69

Conread position: 1-147
Cow position: chr21:10633626-10633774 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr21:4080373-4080218 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 1-148
Cow position: chr21:10001089-10000946 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 47, 64

Conread position: 1-148
Cow position: chr21:12366396-12366253 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 1-148
Cow position: chr21:12461956-12462105 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 68

Conread position: 1-148
Cow position: chr21:13035030-13035181 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 105, 0

Conread position: 1-148
Cow position: chr21:15445059-15445213 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-148
Cow position: chr21:19936920-19937067 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 87

Conread position: 1-148
Cow position: chr21:20160692-20160549 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 1-148
Cow position: chr21:29978746-29978897 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 64

Conread position: 1-148
Cow position: chr21:29979744-29979890 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 13

Conread position: 1-148
Cow position: chr21:32237309-32237163 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 126
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr21:32339723-32339871 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 63

Conread position: 1-148
Cow position: chr21:32535989-32535842 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 69

Conread position: 1-148
Cow position: chr21:34390961-34391105 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 42, 68

Conread position: 1-148
Cow position: chr21:41454935-41455085 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 88, 50

Conread position: 1-148
Cow position: chr21:42913731-42913880 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 1-148
Cow position: chr21:48484433-48484578 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 100

Conread position: 1-150
Cow position: chr21:37345083-37345238 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 1-150
Cow position: chr21:42190161-42190305 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 64

Conread position: 1-151
Cow position: chr21:8618291-8618137 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1-151
Cow position: chr21:13840339-13840185 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 140

Conread position: 1-151
Cow position: chr21:37361462-37361605 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 71

Conread position: 1-151
Cow position: chr21:40786692-40786533 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 1-152
Cow position: chr21:27124112-27124265 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 127, 122

Conread position: 1-154
Cow position: chr21:10007626-10007782 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 21

Conread position: 2-146
Cow position: chr21:18494982-18494833 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 2-148
Cow position: chr21:13303832-13303685 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 23

Conread position: 2-148
Cow position: chr21:42905363-42905512 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 131

Conread position: 3-148
Cow position: chr21:28027820-28027669 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 5-125
Cow position: chr21:34722776-34722901 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 5-148
Cow position: chr21:28512539-28512398 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 5-148
Cow position: chr21:41155873-41155726 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 64

Conread position: 5-148
Cow position: chr21:43357248-43357398 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 0

Conread position: 7-137
Cow position: chr21:14452244-14452113 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 7-145
Cow position: chr21:45330593-45330739 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 7-148
Cow position: chr21:31676507-31676364 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 128

Conread position: 7-148
Cow position: chr21:40899349-40899202 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 7-150
Cow position: chr21:911959-912103 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 8-148
Cow position: chr21:9416255-9416108 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 42, 63

Conread position: 9-126
Cow position: chr21:4568290-4568173 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 14-148
Cow position: chr21:5344659-5344520 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 71

Conread position: 17-170
Cow position: chr21:17637899-17637744 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 92, 137

Conread position: 20-144
Cow position: chr21:41974380-41974509 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 21-148
Cow position: chr21:47802263-47802394 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 48

Conread position: 21-151
Cow position: chr21:21480186-21480320 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 24-148
Cow position: chr21:44114145-44114264 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 29-141
Cow position: chr21:42343563-42343456 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 133-799
Cow position: chr21:7155822-7156476 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 8

Conread position: 133-799
Cow position: chr21:24887079-24887764 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 37

Conread position: 133-815
Cow position: chr21:44805133-44804473 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 75

Conread position: 133-825
Cow position: chr21:22855341-22856016 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 137-406
Cow position: chr21:18829440-18829175 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 53

Conread position: 137-423
Cow position: chr21:47360732-47360449 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 14

Conread position: 137-702
Cow position: chr21:18285245-18285797 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 157

Conread position: 137-824
Cow position: chr21:81184-81866 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 69

Conread position: 137-827
Cow position: chr21:25472638-25473300 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 74

Conread position: 141-825
Cow position: chr21:2419640-2420302 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 70

Conread position: 141-825
Cow position: chr21:13300267-13300949 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 63

Conread position: 145-496
Cow position: chr21:46974283-46973953 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 29

Conread position: 145-825
Cow position: chr21:15546241-15545568 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 56

Conread position: 145-826
Cow position: chr21:33728554-33729231 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 187

Conread position: 146-825
Cow position: chr21:149595-150273 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 205

Conread position: 150-543
Cow position: chr21:43154-43544 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 201

Conread position: 150-826
Cow position: chr21:12802659-12801982 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 24

Conread position: 155-466
Cow position: chr21:4282956-4282647 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 163

Conread position: 157-532
Cow position: chr21:22463656-22464019 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 22

Conread position: 163-825
Cow position: chr21:28811124-28810455 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 165-519
Cow position: chr21:18837183-18836844 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 259
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 47, 155

Conread position: 166-509
Cow position: chr21:21412121-21411799 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 83

Conread position: 167-382
Cow position: chr21:36977469-36977259 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 72

Conread position: 169-669
Cow position: chr21:28028101-28028595 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 129

Conread position: 176-823
Cow position: chr21:1766048-1765407 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 15

Conread position: 200-494
Cow position: chr21:28441945-28442248 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 219-776
Cow position: chr21:3586374-3585831 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 39

Conread position: 229-827
Cow position: chr21:27864324-27863720 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 128

Conread position: 240-518
Cow position: chr21:28625263-28625523 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 77

Conread position: 263-691
Cow position: chr21:28730178-28730581 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 54

Conread position: 286-825
Cow position: chr21:30250940-30250411 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 51

Conread position: 308-827
Cow position: chr21:5634292-5634808 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 311-825
Cow position: chr21:23605951-23606471 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 115

Conread position: 317-703
Cow position: chr21:9011878-9011501 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 322-827
Cow position: chr21:29484257-29484747 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 102

Conread position: 341-825
Cow position: chr21:22856491-22856974 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 86

Conread position: 341-827
Cow position: chr21:5899098-5898599 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 84

Conread position: 356-620
Cow position: chr21:28881441-28881704 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 28

Conread position: 356-709
Cow position: chr21:34738834-34739193 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 39

Conread position: 376-647
Cow position: chr21:220086-220352 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 112, 47

Show alignments to all cow chromosomes.