Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-118 |
| Cow position: | chr22:1991424-1991309 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 64 |
| Conread position: | 1-126 |
| Cow position: | chr22:12389044-12388913 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 93 |
| Conread position: | 1-134 |
| Cow position: | chr22:3541775-3541907 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 1-134 |
| Cow position: | chr22:8302905-8303038 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-142 |
| Cow position: | chr22:15959820-15959970 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-145 |
| Cow position: | chr22:1975559-1975414 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-146 |
| Cow position: | chr22:16621123-16620974 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 1-148 |
| Cow position: | chr22:66380-66238 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:3945123-3944973 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-148 |
| Cow position: | chr22:4108790-4108940 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 1-148 |
| Cow position: | chr22:10919906-10920065 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:11130815-11130670 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:11500728-11500577 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr22:12681855-12681994 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:18218940-18219095 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:26107005-26106857 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 1-148 |
| Cow position: | chr22:26134281-26134436 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:26659001-26658854 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 1-148 |
| Cow position: | chr22:27274744-27274894 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 1-148 |
| Cow position: | chr22:34726621-34726471 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-148 |
| Cow position: | chr22:36539717-36539874 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 1-148 |
| Cow position: | chr22:38940001-38940150 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr22:40374555-40374405 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 1-148 |
| Cow position: | chr22:43291949-43292102 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-152 |
| Cow position: | chr22:3533887-3533742 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 4-141 |
| Cow position: | chr22:12800610-12800469 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-148 |
| Cow position: | chr22:39494252-39494404 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 7-146 |
| Cow position: | chr22:12777648-12777782 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 112, 25 |
| Conread position: | 7-148 |
| Cow position: | chr22:16812224-16812364 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-148 |
| Cow position: | chr22:27047463-27047601 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-148 |
| Cow position: | chr22:27825780-27825635 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 7-150 |
| Cow position: | chr22:37201795-37201653 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 41, 63 |
| Conread position: | 7-151 |
| Cow position: | chr22:30269350-30269209 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 14-148 |
| Cow position: | chr22:2010735-2010598 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 113 |
| Conread position: | 14-148 |
| Cow position: | chr22:38313534-38313665 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 14-151 |
| Cow position: | chr22:37817690-37817553 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 19-148 |
| Cow position: | chr22:40048482-40048362 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 21-148 |
| Cow position: | chr22:29013807-29013676 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 32-148 |
| Cow position: | chr22:40120959-40121079 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 36-148 |
| Cow position: | chr22:28146595-28146483 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 110-424 |
| Cow position: | chr22:25340395-25340700 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 133-493 |
| Cow position: | chr22:14699834-14699510 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 133-644 |
| Cow position: | chr22:11988445-11987951 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 206 |
| Conread position: | 134-823 |
| Cow position: | chr22:38440108-38439430 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 156 |
| Conread position: | 137-419 |
| Cow position: | chr22:40589656-40589961 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 234 |
| Conread position: | 137-517 |
| Cow position: | chr22:15953734-15953368 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 42 |
| Conread position: | 137-606 |
| Cow position: | chr22:2415164-2415618 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 223 |
| Conread position: | 137-709 |
| Cow position: | chr22:12728395-12727835 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 137-773 |
| Cow position: | chr22:22862493-22861874 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 137-825 |
| Cow position: | chr22:8734270-8733592 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 115 |
| Conread position: | 137-825 |
| Cow position: | chr22:33902037-33901345 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 247 |
| Conread position: | 138-825 |
| Cow position: | chr22:45106860-45106189 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 550 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 213 |
| Conread position: | 146-707 |
| Cow position: | chr22:13896916-13897464 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 58 |
| Conread position: | 146-822 |
| Cow position: | chr22:46611751-46611101 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 147-825 |
| Cow position: | chr22:29464167-29464836 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 208 |
| Conread position: | 150-411 |
| Cow position: | chr22:5315520-5315781 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 201 |
| Conread position: | 162-825 |
| Cow position: | chr22:1280315-1279656 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 164-825 |
| Cow position: | chr22:39039084-39038418 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 184 |
| Conread position: | 165-706 |
| Cow position: | chr22:17834535-17833997 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 165-817 |
| Cow position: | chr22:32951523-32952189 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 184 |
| Conread position: | 167-512 |
| Cow position: | chr22:44504470-44504147 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 168-537 |
| Cow position: | chr22:15920539-15920183 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 147 |
| Conread position: | 171-453 |
| Cow position: | chr22:5296606-5296873 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 24 |
| Conread position: | 175-519 |
| Cow position: | chr22:11767526-11767197 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 175-823 |
| Cow position: | chr22:48271730-48271067 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 53 |
| Conread position: | 181-523 |
| Cow position: | chr22:30092102-30092435 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 197-417 |
| Cow position: | chr22:3303304-3303089 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 17, 149 |
| Conread position: | 206-411 |
| Cow position: | chr22:17677045-17677253 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 113 |
| Conread position: | 211-825 |
| Cow position: | chr22:19828850-19828248 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 212-757 |
| Cow position: | chr22:8505012-8505552 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 216 |
| Conread position: | 212-823 |
| Cow position: | chr22:8480767-8481376 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 216 |
| Conread position: | 218-796 |
| Cow position: | chr22:26019352-26018783 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 130 |
| Conread position: | 233-815 |
| Cow position: | chr22:6928591-6929170 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 239-669 |
| Cow position: | chr22:9277167-9277583 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 303-796 |
| Cow position: | chr22:45133435-45132946 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 338-597 |
| Cow position: | chr22:42777121-42777377 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 339-494 |
| Cow position: | chr22:13295789-13295940 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 343-827 |
| Cow position: | chr22:17183080-17183579 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 344-821 |
| Cow position: | chr22:2697913-2698385 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 369-543 |
| Cow position: | chr22:38553713-38553884 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 52 |
Show alignments to all cow chromosomes.