Cow genome map
| Conread name: | Lng1-LNG010014A07 |
| Conread position: | 1-122 |
| Cow position: | chr24:44041085-44041209 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 1-126 |
| Cow position: | chr24:39143537-39143409 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 1-129 |
| Cow position: | chr24:19633998-19633870 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-133 |
| Cow position: | chr24:15707514-15707650 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-134 |
| Cow position: | chr24:18970581-18970715 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-144 |
| Cow position: | chr24:21264582-21264729 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-146 |
| Cow position: | chr24:33944329-33944187 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 1-146 |
| Cow position: | chr24:38347611-38347460 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-147 |
| Cow position: | chr24:11007146-11006994 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-147 |
| Cow position: | chr24:35074019-35073871 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr24:2095964-2096111 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:6900753-6900602 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:6913839-6913986 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 136 |
| Conread position: | 1-148 |
| Cow position: | chr24:15473287-15473133 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:17955515-17955669 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 1-148 |
| Cow position: | chr24:18695546-18695399 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 1-148 |
| Cow position: | chr24:25320922-25320767 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:27039973-27039816 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:27149322-27149175 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 1-148 |
| Cow position: | chr24:27300096-27299948 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:27341095-27341246 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:32693631-32693480 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:38814892-38814749 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-149 |
| Cow position: | chr24:7917436-7917592 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 4-148 |
| Cow position: | chr24:25950743-25950889 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 5-139 |
| Cow position: | chr24:29707875-29708017 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 5-148 |
| Cow position: | chr24:27096604-27096463 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 5-148 |
| Cow position: | chr24:27267556-27267413 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 6-148 |
| Cow position: | chr24:3430654-3430513 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 66 |
| Conread position: | 7-146 |
| Cow position: | chr24:3664087-3663944 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 7-146 |
| Cow position: | chr24:18405400-18405528 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 7-148 |
| Cow position: | chr24:591834-591688 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 7-148 |
| Cow position: | chr24:29595890-29596038 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 7-148 |
| Cow position: | chr24:40130047-40129900 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 14-148 |
| Cow position: | chr24:18343965-18343826 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 14-148 |
| Cow position: | chr24:28354062-28353929 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 16-151 |
| Cow position: | chr24:6071508-6071369 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 20-150 |
| Cow position: | chr24:24457338-24457471 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 28, 50 |
| Conread position: | 21-148 |
| Cow position: | chr24:20249991-20250126 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 24-133 |
| Cow position: | chr24:22565472-22565585 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 24-150 |
| Cow position: | chr24:5152140-5152009 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 26-148 |
| Cow position: | chr24:24002882-24002753 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 110-555 |
| Cow position: | chr24:9071515-9071081 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 110-825 |
| Cow position: | chr24:18112783-18113496 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 556 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 110-825 |
| Cow position: | chr24:20604077-20604789 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 130-792 |
| Cow position: | chr24:12203166-12202502 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 45 |
| Conread position: | 131-400 |
| Cow position: | chr24:10852920-10852651 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 133-672 |
| Cow position: | chr24:37197378-37196842 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 107 |
| Conread position: | 133-827 |
| Cow position: | chr24:16056517-16055822 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 116 |
| Conread position: | 134-666 |
| Cow position: | chr24:30765669-30766183 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 224 |
| Conread position: | 136-654 |
| Cow position: | chr24:14745711-14746206 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 179 |
| Conread position: | 137-423 |
| Cow position: | chr24:39258199-39258477 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 137-703 |
| Cow position: | chr24:5910172-5910734 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 141-825 |
| Cow position: | chr24:17365618-17364943 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 146-466 |
| Cow position: | chr24:16558919-16558615 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 104 |
| Conread position: | 146-824 |
| Cow position: | chr24:12696762-12696085 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 196 |
| Conread position: | 147-815 |
| Cow position: | chr24:38814006-38814673 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 194 |
| Conread position: | 147-825 |
| Cow position: | chr24:22047707-22047034 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 526 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 204 |
| Conread position: | 148-767 |
| Cow position: | chr24:16646566-16645948 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 155-825 |
| Cow position: | chr24:6340073-6340726 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 197 |
| Conread position: | 166-824 |
| Cow position: | chr24:31125524-31126157 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 166-825 |
| Cow position: | chr24:19466869-19466224 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 202-825 |
| Cow position: | chr24:33239461-33238840 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 206-765 |
| Cow position: | chr24:31370866-31370313 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 144 |
| Conread position: | 263-824 |
| Cow position: | chr24:13117123-13117671 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 75 |
| Conread position: | 273-825 |
| Cow position: | chr24:21265348-21264797 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 276-827 |
| Cow position: | chr24:11876033-11876594 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 156 |
| Conread position: | 302-824 |
| Cow position: | chr24:10260174-10259650 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 324-639 |
| Cow position: | chr24:39441583-39441273 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 338-815 |
| Cow position: | chr24:31308632-31309123 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 294 |
| Conread position: | 369-827 |
| Cow position: | chr24:43042452-43042908 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 16, 57 |
Show alignments to all cow chromosomes.